Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq2028 271 7e-68 >seq2028 Length=154558 Score = 271 bits (300), Expect = 7e-68 Identities = 614/918 (67%), Gaps = 4/918 (0%) Strand=Plus/Plus Query 13904 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13963 || || | ||| | |||||| | ||| | |||||||| ||||| ||||||||||| Sbjct 59767 ACACCAACTTTCTTATATTCGCCCACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTGTA 59826 Query 13964 GATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGT 14023 || || | |||||| ||||| ||||| |||| | | | ||| | || |||| | Sbjct 59827 GAAATGATCGTCATAAAGTCAAACGGATTCGTTGCACCATAGATTTTCTTGCAGCCTAAT 59886 Query 14024 TCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATA 14083 || || || | ||| || | || || ||||| ||| |||| || | |||||||| Sbjct 59887 TCACTTAACAAACGATCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCATT 59946 Query 14084 CCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCG 14143 || || || | || || | | | || || |||| |||||| | || || || Sbjct 59947 CCAATCAGACTGACTGGCAAAGCCTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCT 60006 Query 14144 TTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAA 14203 |||||| | || | |||| | || || | | |||||| || | ||| Sbjct 60007 GCAATAATACTGGTTACTCTTTCTTGTGATGGTTTCTGATGCAGATGTGAGAATAGTAAG 60066 Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || |||||||||||||| || || |||||||| || | ||| |||||||||||||| Sbjct 60067 CATGCAAAATCACAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTAAA 60126 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323 || ||||| | || ||||| |||||||| || || || || || || || || Sbjct 60127 CCGGGCATAAGACCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAAAAAA 60186 Query 14324 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCT-TTTTTGTTCGA 14382 || || ||||| |||||||| || | |||| ||| || ||||| | | |||| | | | Sbjct 60187 ATGCCTTCAACGGCAGCAAAAGCCACCAATCTTTCGCCGAACGAGGATGTTTTCGAGCTA 60246 Query 14383 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442 ||||| ||| ||||| |||| ||| || |||| | | ||| ||||||||||| || Sbjct 60247 -ATCCACTTTAGGGCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGCGTT 60305 Query 14443 AAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14502 ||| || || || || || | | || || || ||||||||| ||| ||||| Sbjct 60306 AAACAAGAACTCTTTTTCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGTACAT 60365 Query 14503 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14562 |||||| || || ||||| || || ||||| || ||||||||||| | |||||| | | Sbjct 60366 TTCAGAATGGATATTTTCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAGTCAC 60425 Query 14563 TTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14621 ||| || || ||| | ||| | ||| | | ||| ||||| || |||||||| || | Sbjct 60426 TTGAACTTCTTGACTGAAA-CGTTCCACAAGATTCTCATTTACAATACCATCTGAGGCAG 60484 Query 14622 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAAT 14681 ||||||| || || | || ||| || | | | |||||| | ||||| | ||| | Sbjct 60485 CAAAAAAAGCTAACACGTGCGAAATGAAATGTCGTTCTTCAGATTTCAGTTTCTCCCAGT 60544 Query 14682 CGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTT 14741 || ||| | | || || ||||| || |||||||| ||| |||||| | Sbjct 60545 GTCGTAGATCATGGGTGAGGTCCACTTCCTCGGTAGTCCAAAAGGAAGCTTCAGCTTCCT 60604 Query 14742 TATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTGAAGATGTTT 14801 | || | ||| || ||| || || || || | ||||||||| || ||| Sbjct 60605 TGTATTTCTGCCAAATATCTGGGAATTCAATTGGGAATAAAACAAATCTTCGAGGGTTTT 60664 Query 14802 CTTTAAGAATTGGTTCCA 14819 |||| || | ||||||| Sbjct 60665 CTTTCAGTAAAGGTTCCA 60682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482249757929280