Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq173 122 1e-22 >seq173 Length=58411 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 15/215 (7%) Strand=Plus/Minus Query 104530 GATAGAAGAATGATATTATTAGCTTGGAACCCAAAGGATAATTCTAAAATGGCACTTCCT 104589 |||||||||||||| | | || ||||| || | |||| || ||||||| || || Sbjct 29407 GATAGAAGAATGATTATGTGTGCATGGAATCCTACGGATCTCCCTGAAATGGCTCTACCG 29348 Query 104590 CCTTGTCATTGTATAGCACATTTTGATGTAAGTTCAAAAATAAATGGTAAAAGAGAATTG 104649 ||||| |||||| ||| || ||| |||| | ||| |||| ||||| Sbjct 29347 CCTTGCCATTGTTTAGTGCAGTTTTATGT--GGCCAA-------TGGT------GAATTA 29303 Query 104650 TCTTGTCATTTATTTCAAAGATCTGCAGATATGGGGTTGGGAGTTCCTTTTAACATAGCA 104709 || ||||| |||| ||| ||||| || |||||||| | |||||||||||||| || || Sbjct 29302 TCCTGTCAGTTATATCAGAGATCAGCTGATATGGGACTTGGAGTTCCTTTTAATATTGCT 29243 Query 104710 AGTTATGCATTATTAACACATATAATAGCTCATGT 104744 || ||||| || ||||| |||| ||||||||||| Sbjct 29242 AGCTATGCTTTGTTAACTTATATGATAGCTCATGT 29208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679679320878720