Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq2028 224 9e-54
seq820 165 7e-36
seq4409 149 6e-31
seq1411 114 1e-20
seq2259 111 1e-19
>seq2028
Length=154558
Score = 224 bits (248), Expect = 9e-54
Identities = 432/630 (69%), Gaps = 18/630 (3%)
Strand=Plus/Minus
Query 57520 TGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACA 57579
|| |||| || || || |||||||| | || || ||||||| ||||| |||||| | |
Sbjct 60670 TGAAAGAAAACCCTCGAAGATTTGTTTTATTCCCAATTGAATTCCCAGATATTTGGCAGA 60611
Query 57580 TGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATC 57639
||||| | || ||||| || |||||||| ||| ||||| ||||| | | ||||
Sbjct 60610 AATACAAGGAAGCTGAAGCTTCCTTTTGGACTACCGAGGAAGTGGACCTCACCCATGATC 60551
Query 57640 TGAGCGATTGGGATTCCCTCAAAGAATCTGA-GA--GAAATTTTATTAAACACGTGTTGG 57696
| | | ||||| || ||| ||||| || || |||| ||| |||||||| |
Sbjct 60550 TACGACACTGGGAGAAACTGAAA---TCTGAAGAACGACATTTCATTTCGCACGTGTTAG 60494
Query 57697 CGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA--CA 57754
| ||||| || || || ||||||||||| || |||||| | || ||| | ||||| ||
Sbjct 60493 CTTTTTTTGCTGCCTCAGATGGTATTGTAAATGAGAATCTTGTGGAACG--TTTCAGTCA 60436
Query 57755 AGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGT 57814
|||||| |||||||| || || | || ||||| ||||| || | || |||||||| |
Sbjct 60435 AGAAGTTCAAGTGACTGAAGCTCGTTGTTTTTATGGATTCCAGATTGCAATTGAAAATAT 60376
Query 57815 GCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACG 57874
||||| |||||||| ||| || || ||||| | | || | | || |||
Sbjct 60375 CCATTCTGAAATGTACAGCAAACTTATTGAAACGTATATCAGCGATCCCAATGAAAAAGA 60316
Query 57875 TAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAAT 57934
|||| ||||| || ||||| ||||| | ||||| || || ||| | |
Sbjct 60315 GTTCTTGTTTAACGCTATTGAAACCATGCCGTGTGTTAAGAAGAAAGCTGATTGGGCCCT 60256
Query 57935 CAAATGGATAAAAAGCGC---CACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGC 57991
|| ||||| ||| | || || |||||| ||| || | | || || || ||
Sbjct 60255 AAAGTGGAT---TAGCTCGAAAACATCCTCGTTCGGCGAAAGATTGGTGGCTTTTGCTGC 60199
Query 57992 CGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGG 58051
||| ||||| || || || || |||||||| || || || ||| | |||||||| ||
Sbjct 60198 CGTTGAAGGCATTTTTTTCAGTGGTAGCTTTGCAGCGATTTTCTGGTTAAAGAAACGTGG 60139
Query 58052 CCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATAC 58111
|| |||||||| | || ||| || || |||||||| | || || ||||| |||
Sbjct 60138 TCTTATGCCCGGTTTAACATTTTCAAATGAATTGATATCCAGAGATGAAGGTCTACATTG 60079
Query 58112 TGATTTTGCGTGCCTAATGTACTCTCACAT 58141
||||||||| ||| || || ||||||||
Sbjct 60078 TGATTTTGCATGCTTA--CTATTCTCACAT 60051
>seq820
Length=22770
Score = 165 bits (182), Expect = 7e-36
Identities = 288/419 (69%), Gaps = 0/419 (0%)
Strand=Plus/Minus
Query 23423 TTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAAC 23482
||||| | || ||||||||| || || ||||||||||| || || | |||| || ||
Sbjct 19999 TTTTTGAGATTCAAAAAGTCAAAAACATCCGCATGCCATGGTTCCAAATAAATAGCGAAA 19940
Query 23483 GCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTT 23542
|| || ||||| ||||| || |||||||| || || ||| || || || ||||| |
Sbjct 19939 GCTCCAGGTCTTTTATTACCACCCTGATCCACATATTTGGCAGTATTATTAAACACTTTA 19880
Query 23543 AGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCT 23602
||||| || |||||||| ||||| | ||| | ||| || | | | |||| ||||
Sbjct 19879 AGCATAGGAACGAGACCATTGGAAGTGCCATTTGTGCCAGCAATATAAGTGCCTTGTGCT 19820
Query 23603 CGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGT 23662
| || || ||||| | | ||| || ||||| | ||| || || || || |||||
Sbjct 19819 CTAATATTATGAACATTTACACCAATTCCTCCTGCATTTTTTGAAATGATAGCACATTGA 19760
Query 23663 TTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAA 23722
| ||| | ||| || ||||| | || ||||| || | ||||||||| |||
Sbjct 19759 GTGAGACACTTGTAAATTCCCTCAAGACTATCCTCAGGCATCATTAGCAAGAAACAAGAA 19700
Query 23723 GACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTAT 23782
|||| ||| | | | || ||||| || || | || || ||||| ||||| || |||
Sbjct 19699 GACAATTGTGGTCTTGGTGTAGCTGCATTAAATAACGTAGGACTGGCATGCGTGAAATAT 19640
Query 23783 CCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACC 23841
| || | |||||| || || || ||||| |||||||||||||| || || ||
Sbjct 19639 TTTTGTGATAGATAATTGTAAGTTTCAATAGCGGCCTCAATGTCCTCTCCATGAATGCC 19581
Score = 100 bits (110), Expect = 3e-16
Identities = 134/182 (74%), Gaps = 7/182 (4%)
Strand=Plus/Minus
Query 22492 GTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGA 22551
||||||||| ||| | ||||| | | |||||||| || | || ||||| || ||
Sbjct 22019 GTAAATGTTACTAGTGTAGGGTTCAATACTCTCATTGTTGCCTAAAATTTGAGCAGTTGA 21960
Query 22552 AGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTT-AC 22610
||| || ||||| || ||||| || | |||||||| || || || || | |||||| ||
Sbjct 21959 AGCTGTAGGCATAGGAGCCAATAGCAAGGAGTTTCTTAATCCATGTTTGGCAATTTTTAC 21900
Query 22611 TCTTGA-GCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTAT 22669
| | | ||||| ||| ||||| | ||| ||||| |||| ||||||||||||||||
Sbjct 21899 TTTCAATGCATC--CCAATCCCATAAATCTGACGGTTTCAC---GTCCCACATATCGTAT 21845
Query 22670 TG 22671
||
Sbjct 21844 TG 21843
>seq4409
Length=33873
Score = 149 bits (164), Expect = 6e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||||||||| | || ||||| || ||||| | || || ||||||||
Sbjct 17757 ATGCAGATTTTCGTAAAGACCTTAACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 17816
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | | |||| || || | ||| |||||||||||| | ||||| ||||||
Sbjct 17817 GACACTATTGAAAATGTAAAGGCAAAAATTCAGGACAAGGAAGGAATTCCGCCAGACCAG 17876
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | | || ||||| |||||||| |||||||| |||| || |||||||||
Sbjct 17877 CAGAGATTGATCTTCGCCGGCAAACAACTGGAAGACGGACGGACTTTGTCCGATTATAAT 17936
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|||||||| ||||| || | ||| |||| ||| ||||||| || ||
Sbjct 17937 ATTCAAAAGGAATCTACCTTACATTTGGTGCTTCGACTGAGAGGTGG 17983
>seq1411
Length=135556
Score = 114 bits (126), Expect = 1e-20
Identities = 121/157 (77%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| || || || || || ||||| ||||| | || |||||||| |||
Sbjct 105700 ATGCAGATTTTCGTGAAAACCCTTACTGGTAAAACCATCACATTGGAAGTTGAACCTTCC 105759
Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | |||||| || ||| || ||| | |||||||||||| | || || |||||
Sbjct 105760 GACACTATCGAAAACGTGAAAGCAAAGATTCA-GGACAAGGAAGGGATCCCCCCAGACCA 105818
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348
|| ||||| || |||||||| |||||| | ||||||
Sbjct 105819 ACAACGTCTCATCTTCGCTGGTAAACAGCTTGAAGAC 105855
>seq2259
Length=79244
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| || ||||| || || || || |||||| | || || ||||| |||
Sbjct 78288 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAACCATCC 78229
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | |||| || || || ||| |||||| ||||| | || || |||||
Sbjct 78228 GACACCATTGAAAATGTAAAGGCGAAAATTCAGGACAAAGAAGGTATCCCCCCAGACCAA 78169
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| ||| | || || ||||| ||||| |||| || | || | ||| |||||
Sbjct 78168 CAACGTTTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGCACCCTCTCCGACTATAAT 78109
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| ||||| || || || || || ||||||| ||| |||| || ||||
Sbjct 78108 ATCCAAAAGGAGTCCACCCTGCACTTGGTACTCAGATTGAGAGGTGGTA 78060
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445677826216320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |