Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2028 224 9e-54 seq820 165 7e-36 seq4409 149 6e-31 seq1411 114 1e-20 seq2259 111 1e-19 >seq2028 Length=154558 Score = 224 bits (248), Expect = 9e-54 Identities = 432/630 (69%), Gaps = 18/630 (3%) Strand=Plus/Minus Query 57520 TGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACA 57579 || |||| || || || |||||||| | || || ||||||| ||||| |||||| | | Sbjct 60670 TGAAAGAAAACCCTCGAAGATTTGTTTTATTCCCAATTGAATTCCCAGATATTTGGCAGA 60611 Query 57580 TGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATC 57639 ||||| | || ||||| || |||||||| ||| ||||| ||||| | | |||| Sbjct 60610 AATACAAGGAAGCTGAAGCTTCCTTTTGGACTACCGAGGAAGTGGACCTCACCCATGATC 60551 Query 57640 TGAGCGATTGGGATTCCCTCAAAGAATCTGA-GA--GAAATTTTATTAAACACGTGTTGG 57696 | | | ||||| || ||| ||||| || || |||| ||| |||||||| | Sbjct 60550 TACGACACTGGGAGAAACTGAAA---TCTGAAGAACGACATTTCATTTCGCACGTGTTAG 60494 Query 57697 CGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA--CA 57754 | ||||| || || || ||||||||||| || |||||| | || ||| | ||||| || Sbjct 60493 CTTTTTTTGCTGCCTCAGATGGTATTGTAAATGAGAATCTTGTGGAACG--TTTCAGTCA 60436 Query 57755 AGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGT 57814 |||||| |||||||| || || | || ||||| ||||| || | || |||||||| | Sbjct 60435 AGAAGTTCAAGTGACTGAAGCTCGTTGTTTTTATGGATTCCAGATTGCAATTGAAAATAT 60376 Query 57815 GCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACG 57874 ||||| |||||||| ||| || || ||||| | | || | | || ||| Sbjct 60375 CCATTCTGAAATGTACAGCAAACTTATTGAAACGTATATCAGCGATCCCAATGAAAAAGA 60316 Query 57875 TAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAAT 57934 |||| ||||| || ||||| ||||| | ||||| || || ||| | | Sbjct 60315 GTTCTTGTTTAACGCTATTGAAACCATGCCGTGTGTTAAGAAGAAAGCTGATTGGGCCCT 60256 Query 57935 CAAATGGATAAAAAGCGC---CACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGC 57991 || ||||| ||| | || || |||||| ||| || | | || || || || Sbjct 60255 AAAGTGGAT---TAGCTCGAAAACATCCTCGTTCGGCGAAAGATTGGTGGCTTTTGCTGC 60199 Query 57992 CGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGG 58051 ||| ||||| || || || || |||||||| || || || ||| | |||||||| || Sbjct 60198 CGTTGAAGGCATTTTTTTCAGTGGTAGCTTTGCAGCGATTTTCTGGTTAAAGAAACGTGG 60139 Query 58052 CCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATAC 58111 || |||||||| | || ||| || || |||||||| | || || ||||| ||| Sbjct 60138 TCTTATGCCCGGTTTAACATTTTCAAATGAATTGATATCCAGAGATGAAGGTCTACATTG 60079 Query 58112 TGATTTTGCGTGCCTAATGTACTCTCACAT 58141 ||||||||| ||| || || |||||||| Sbjct 60078 TGATTTTGCATGCTTA--CTATTCTCACAT 60051 >seq820 Length=22770 Score = 165 bits (182), Expect = 7e-36 Identities = 288/419 (69%), Gaps = 0/419 (0%) Strand=Plus/Minus Query 23423 TTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAAC 23482 ||||| | || ||||||||| || || ||||||||||| || || | |||| || || Sbjct 19999 TTTTTGAGATTCAAAAAGTCAAAAACATCCGCATGCCATGGTTCCAAATAAATAGCGAAA 19940 Query 23483 GCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTT 23542 || || ||||| ||||| || |||||||| || || ||| || || || ||||| | Sbjct 19939 GCTCCAGGTCTTTTATTACCACCCTGATCCACATATTTGGCAGTATTATTAAACACTTTA 19880 Query 23543 AGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCT 23602 ||||| || |||||||| ||||| | ||| | ||| || | | | |||| |||| Sbjct 19879 AGCATAGGAACGAGACCATTGGAAGTGCCATTTGTGCCAGCAATATAAGTGCCTTGTGCT 19820 Query 23603 CGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGT 23662 | || || ||||| | | ||| || ||||| | ||| || || || || ||||| Sbjct 19819 CTAATATTATGAACATTTACACCAATTCCTCCTGCATTTTTTGAAATGATAGCACATTGA 19760 Query 23663 TTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAA 23722 | ||| | ||| || ||||| | || ||||| || | ||||||||| ||| Sbjct 19759 GTGAGACACTTGTAAATTCCCTCAAGACTATCCTCAGGCATCATTAGCAAGAAACAAGAA 19700 Query 23723 GACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTAT 23782 |||| ||| | | | || ||||| || || | || || ||||| ||||| || ||| Sbjct 19699 GACAATTGTGGTCTTGGTGTAGCTGCATTAAATAACGTAGGACTGGCATGCGTGAAATAT 19640 Query 23783 CCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACC 23841 | || | |||||| || || || ||||| |||||||||||||| || || || Sbjct 19639 TTTTGTGATAGATAATTGTAAGTTTCAATAGCGGCCTCAATGTCCTCTCCATGAATGCC 19581 Score = 100 bits (110), Expect = 3e-16 Identities = 134/182 (74%), Gaps = 7/182 (4%) Strand=Plus/Minus Query 22492 GTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGA 22551 ||||||||| ||| | ||||| | | |||||||| || | || ||||| || || Sbjct 22019 GTAAATGTTACTAGTGTAGGGTTCAATACTCTCATTGTTGCCTAAAATTTGAGCAGTTGA 21960 Query 22552 AGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTT-AC 22610 ||| || ||||| || ||||| || | |||||||| || || || || | |||||| || Sbjct 21959 AGCTGTAGGCATAGGAGCCAATAGCAAGGAGTTTCTTAATCCATGTTTGGCAATTTTTAC 21900 Query 22611 TCTTGA-GCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTAT 22669 | | | ||||| ||| ||||| | ||| ||||| |||| |||||||||||||||| Sbjct 21899 TTTCAATGCATC--CCAATCCCATAAATCTGACGGTTTCAC---GTCCCACATATCGTAT 21845 Query 22670 TG 22671 || Sbjct 21844 TG 21843 >seq4409 Length=33873 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||||||||| | || ||||| || ||||| | || || |||||||| Sbjct 17757 ATGCAGATTTTCGTAAAGACCTTAACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 17816 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| || || | ||| |||||||||||| | ||||| |||||| Sbjct 17817 GACACTATTGAAAATGTAAAGGCAAAAATTCAGGACAAGGAAGGAATTCCGCCAGACCAG 17876 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || ||||| |||||||| |||||||| |||| || ||||||||| Sbjct 17877 CAGAGATTGATCTTCGCCGGCAAACAACTGGAAGACGGACGGACTTTGTCCGATTATAAT 17936 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| ||||| || | ||| |||| ||| ||||||| || || Sbjct 17937 ATTCAAAAGGAATCTACCTTACATTTGGTGCTTCGACTGAGAGGTGG 17983 >seq1411 Length=135556 Score = 114 bits (126), Expect = 1e-20 Identities = 121/157 (77%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || || || || || ||||| ||||| | || |||||||| ||| Sbjct 105700 ATGCAGATTTTCGTGAAAACCCTTACTGGTAAAACCATCACATTGGAAGTTGAACCTTCC 105759 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||||| || ||| || ||| | |||||||||||| | || || ||||| Sbjct 105760 GACACTATCGAAAACGTGAAAGCAAAGATTCA-GGACAAGGAAGGGATCCCCCCAGACCA 105818 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 || ||||| || |||||||| |||||| | |||||| Sbjct 105819 ACAACGTCTCATCTTCGCTGGTAAACAGCTTGAAGAC 105855 >seq2259 Length=79244 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || ||||| || || || || |||||| | || || ||||| ||| Sbjct 78288 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAACCATCC 78229 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || || || ||| |||||| ||||| | || || ||||| Sbjct 78228 GACACCATTGAAAATGTAAAGGCGAAAATTCAGGACAAAGAAGGTATCCCCCCAGACCAA 78169 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || || ||||| ||||| |||| || | || | ||| ||||| Sbjct 78168 CAACGTTTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGCACCCTCTCCGACTATAAT 78109 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || || || || || ||||||| ||| |||| || |||| Sbjct 78108 ATCCAAAAGGAGTCCACCCTGCACTTGGTACTCAGATTGAGAGGTGGTA 78060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445677826216320