Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq173 172 1e-37 >seq173 Length=58411 Score = 172 bits (190), Expect = 1e-37 Identities = 330/482 (68%), Gaps = 6/482 (1%) Strand=Plus/Minus Query 35216 GACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTC 35275 || ||| ||||| | || || || || | |||||||| | || || |||||||| Sbjct 29722 GAGACTTTTCCACTCCTTACAACAAAACGGGTGTTCTGGAGGGCTGTAGTTGAAGAACTG 29663 Query 35276 TCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGATACACATC 35335 | ||||||||| || || | ||| |||| ||| | | |||| || | ||||| Sbjct 29662 TTGTGGTTCATAAGAGGTAGCACAAACGCATTTGAACTCAGCGAGAAAAATGTTCACATT 29603 Query 35336 TGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAG 35395 ||| | || ||| | || ||||| | || | || || ||| | | ||| Sbjct 29602 TGGGATGCAAATAGTAGTCGTGAATTCCTAGATTCAATTGGACTAACTGATCGTGATGAG 29543 Query 35396 GGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACC 35455 || ||||||||||| |||| || |||||||||||||| | |||||||||||| | Sbjct 29542 GGCGATTTGGGACCAATATATGGTTTCCAATGGCGTCACTATGGTGCTGAATACAAGGGA 29483 Query 35456 TGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTG 35515 ||| ||||||| || || |||||||||||||| | || | || ||| | Sbjct 29482 ATGCATTCGAATTATACAAATAAAGGCATTGATCAATTGGCACAGGTAATCAATACCATC 29423 Query 35516 AGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCAC 35575 | | ||| || |||||||| ||||||||| ||||||||||||| |||||| | Sbjct 29422 AAAACTAATTCAACAGATAGAAGAATGATTATGTGTGCATGGAATCCTACGGATCTCCCT 29363 Query 35576 CTTATGGCTCTTCCTCCATGCCACATGACT-GCTCAATTTTATGTGGCTAATGGAGAATT 35634 |||||||| || || ||||| || | | || ||||||||||| ||||| ||||| Sbjct 29362 GAAATGGCTCTACCGCCTTGCCA-TTGTTTAGTGCAGTTTTATGTGGCCAATGGTGAATT 29304 Query 35635 GTCGTGCCAGTTGTATCAGCGA--AGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATT 35692 || || ||||| |||||| || ||| || ||| || | || || || || |||||| Sbjct 29303 ATCCTGTCAGTTATATCAGAGATCAGCTGATATG--GGACTTGGAGTTCCTTTTAATATT 29246 Query 35693 GC 35694 || Sbjct 29245 GC 29244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989382453900680