Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2028 264 1e-65 seq820 156 5e-33 >seq2028 Length=154558 Score = 264 bits (292), Expect = 1e-65 Identities = 583/872 (67%), Gaps = 3/872 (0%) Strand=Plus/Plus Query 33297 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATG 33356 ||||| ||||| ||||| ||||| || ||||| ||||| || || | ||| Sbjct 59782 TATTCGCCCACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTGTAGAAATGATCGTCATA 59841 Query 33357 AAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAATCTA 33416 || ||||||||||| || || || ||||| || | || |||||| | ||| | | Sbjct 59842 AAGTCAAACGGATTCGTTGCACCATAGATTTTCTTGCAGCCTAATTCACTTAACAAACGA 59901 Query 33417 TCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACT 33476 || || || ||||||||||| ||||| || ||||||||||| || || | ||| Sbjct 59902 TCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCATTCCAATCAGACTGACT 59961 Query 33477 GGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAATCTA 33536 || | |||| ||| | || |||||||| || | || |||| || |||||| | Sbjct 59962 GGCAAAGCCTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCTGCAATAATACTGGTT 60021 Query 33537 ACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAATCGCAG 33596 || |||||| ||| || | |||| || | || ||||| ||||| || Sbjct 60022 ACTCTTTCTTGTGATGGTTTCTGATGCAGATGTGAGAATAGTAAGCATGCAAAATCACAA 60081 Query 33597 TGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCA 33656 || ||||| || ||||| || ||||| || ||||| || | |||||||| || ||| Sbjct 60082 TGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTAAACCGGGCATAAGACCA 60141 Query 33657 CGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCA 33716 || || || | ||| || || | || || || || || || ||||| || ||| Sbjct 60142 CGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAAAAAAATGCCTTCAACGGCA 60201 Query 33717 GCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCTGTCATG--TATCCACTTTTGAGCC 33773 ||||| || | | ||| || || | || | | || | ||||||||| | ||| Sbjct 60202 GCAAAAGCCACCAATCTTTCGCCGAACGAGGATGTTTTCGAGCTAATCCACTTTAGGGCC 60261 Query 33774 CAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttt 33833 ||||| || ||||| || ||||| ||||| ||||| || || ||||| | | | |||| Sbjct 60262 CAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGCGTTAAACAAGAACTCTTTT 60321 Query 33834 tCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTT 33893 ||||| ||| | | ||| || || || | || |||||||| ||||| || ||| Sbjct 60322 TCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGTACATTTCAGAATGGATATTT 60381 Query 33894 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAA 33953 ||||| || ||||| ||||| || ||||| | ||| || || | || |||||| || Sbjct 60382 TCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAGTCACTTGAACTTCTTGACTG 60441 Query 33954 AATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACA 34013 || ||||| | | ||| ||||| || || ||||| ||| |||||||| || || || Sbjct 60442 AAACGTTCCACAAGATTCTCATTTACAATACCATCTGAGGCAGCAAAAAAAGCTAACACG 60501 Query 34014 TGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGAT 34073 || || |||| | ||| || | | | ||||| | ||| | | ||| | | Sbjct 60502 TGCGAAATGAAATGTCGTTCTTCAGATTTCAGTTTCTCCCAGTGTCGTAGATCATGGGTG 60561 Query 34074 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 34133 | |||||||| || |||||||| || || || || | || || | | ||| || Sbjct 60562 AGGTCCACTTCCTCGGTAGTCCAAAAGGAAGCTTCAGCTTCCTTGTATTTCTGCCAAATA 60621 Query 34134 TCATGATATTGGATTGGGAAAATAACAAATCT 34165 || | ||| |||||||| | ||||||||| Sbjct 60622 TCTGGGAATTCAATTGGGAATAAAACAAATCT 60653 >seq820 Length=22770 Score = 156 bits (172), Expect = 5e-33 Identities = 247/351 (70%), Gaps = 6/351 (2%) Strand=Plus/Minus Query 62775 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62834 ||||||| || |||||||||||||||||||||||||| || |||| |||||||| | | Sbjct 21554 CCTTGAATTCCTATACCGATAGGTCTATGTCTCTTATTGGAATTTTCTGCTTCTGGTAGA 21495 Query 62835 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62894 || ||||| || ||||| ||||| ||||| | ||||| | || ||| | || Sbjct 21494 GGGTAATAGTTTATATCGATAATCTTATTCAAGTTTCTAGTCACTATTTTAGTGATATTT 21435 Query 62895 TTCAGTTTGAGAAAATCAAATCGC---CCATCT--ATT-ACAAACATGTTCAATGCAACA 62948 || ||||| ||||||||| | | | |||| ||| ||||||||||||| | | Sbjct 21434 TTGAGTTTTTCAAAATCAAAACTCTTTCTATCTGCATTAACAAACATGTTCACAGGTATT 21375 Query 62949 GATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 63008 || ||||||||||| || || | || | | || |||| || || |||| ||| Sbjct 21374 GAAGCCAGATTACAGACAGCAATTTCGTCGGGCGACGTGTATTCTACGATTTCAGAACAA 21315 Query 63009 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63068 || ||||| | || || ||| || || | ||||||| ||| | || || || || Sbjct 21314 AGGTTACTGCCTTTTATCACTCCCAAGTTCTTTTGATTAGATTTTCTATTGCAAGCGTCT 21255 Query 63069 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 63119 || ||||| || | |||||||||||||| | ||||| || ||| ||| Sbjct 21254 TTGTAAAGCATATAAGGAGTACCAGTTTCTACTTGAGAAGTTACAATGGCT 21204 Score = 120 bits (132), Expect = 4e-22 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 63762 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTC 63821 |||| ||| || | ||| | ||| || ||||||||||| ||||||||| || ||||| Sbjct 19526 CCTATTGCTACTCTCATAAGCATATGTTGAGGTCTTTCGACAATTTTGCCATTAATTTTT 19467 Query 63822 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63881 || || || || |||||| |||||||||||||||||||||||| ||||| |||| || Sbjct 19466 AATAAATAAGACCTTTCCAGAGTTTTAAAACCAAAATAGTTGTAAGAAAAATCTCTGTCA 19407 Query 63882 TAAATAATAACCGAATTGAGCTTATCCTTAT 63912 || |||||| ||||| || ||||||| Sbjct 19406 TAGATAATATTGGAATTTAGTCGGTCCTTAT 19376 Score = 111 bits (122), Expect = 2e-19 Identities = 283/427 (66%), Gaps = 14/427 (3%) Strand=Plus/Minus Query 63345 tttttAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63404 ||||| |||| | || | | || ||| | |||||| |||||||| || || || | | Sbjct 19999 TTTTTGAGATTCAAAAAGTCAAAAACATCCGCATGCCATGGTTCCAAATAAATAGCGAAA 19940 Query 63405 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63464 ||||||| | ||| || || |||||||| | ||| | || || |||||| | ||| | Sbjct 19939 GCTCCAGGTCTTTTATTACCACCCTGATCCACATATTTGGCAGTATTATTAAACACTTTA 19880 Query 63465 AACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATA---GCCTCCACTG 63521 | ||| |||| | ||| || || | ||||| || || | ||||| |||| || Sbjct 19879 AGCATAGGAACGAGACCATTGGAAGTGCCATTTGTGCCAGCAATATAAGTGCCT----TG 19824 Query 63522 -GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63580 || | ||||||| || || ||| ||||| ||||| |||| || || | || || Sbjct 19823 TGCTCTAATATTATGAACATTTACACCAATTCCTCCTGCATTTTTTGAAATGATAGCACA 19764 Query 63581 TCGTTTTA---ACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAA 63637 | | | | || ||| | || || || | ||||| || ||| | || | || Sbjct 19763 TTGAGTGAGACACTTGTAA---ATTCCCTCAAGACTATCCTCAGGCATCATTAGCAAGAA 19707 Query 63638 ACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 63697 ||| ||||| ||| | | | || | ||||||||||| |||||| || ||||| Sbjct 19706 ACAAGAAGACAATTGTGGTCTTGGTGTAGCTGCATTAAATAACGTAGGACTGGCATGCGT 19647 Query 63698 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63757 || |||||| || || |||||| || |||||||| | || || ||| | ||| Sbjct 19646 GAAATATTTTTGTGATAGATAATTGTAAGTTTCAATAGCGGCCTCAATGTCCTCTCCATG 19587 Query 63758 AATTCCT 63764 ||| ||| Sbjct 19586 AATGCCT 19580 Score = 104 bits (114), Expect = 3e-17 Identities = 139/189 (74%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || |||||||| || || | ||||| ||||||||||| ||||| || || ||||| | Sbjct 22051 ACCTGGAATTCGCCTGAAAGCACTCTACGAGTGTAAATGTTACTAGTGTAGGGTTCAATA 21992 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 |||||| || || ||||||||||||||||| || || |||||||| |||| | || Sbjct 21991 CTCTCATTGTTGCCTAAAATTTGAGCAGTTGAAGCTGTAGGCATAGGAGCCAATAGCAAG 21932 Query 62508 CTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATG-TTCCCAATTCCAAAGA 62564 ||||| | || ||||| | ||||| |||| | ||| ||||||| ||| | | Sbjct 21931 GAGTTTCTTAATCC--ATGTTTGGCAATTTTTACTTTCA-ATGCATCCCAATCCCATAAA 21875 Query 62565 TCCGACGGT 62573 || |||||| Sbjct 21874 TCTGACGGT 21866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629692455242880