Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2028 288 9e-73 seq820 145 7e-30 >seq2028 Length=154558 Score = 288 bits (318), Expect = 9e-73 Identities = 487/699 (70%), Gaps = 5/699 (1%) Strand=Plus/Plus Query 11362 TTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATA 11421 ||| ||||| || || ||||||||| || || | ||||||| ||| ||||| Sbjct 59799 TTCAAAAAAGTTTGTTTTACCTTCTGTAGAAATGATCGTCATAAAGTCAAACGGATTCGT 59858 Query 11422 TACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTAT 11481 | || ||| ||| | || ||||| || |||| || | ||| || || |||||||| Sbjct 59859 TGCACCATAGATTTTCTTGCAGCCTAATTCACTTAACAAACGATCAGCTACAAATTCTAT 59918 Query 11482 ATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAA 11541 ||||||| |||| || |||||||| || || ||| || || | ||| | | ||| Sbjct 59919 ATACTGACACATCAATTTGCAATTCATTCCAATCAGACTGACTGGCAAAGCCTCAGACAA 59978 Query 11542 AAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGG 11601 ||||| | |||||| |||| ||||| || || |||| ||| | ||||| Sbjct 59979 GAACTCTTGTTCTATTGTAACTGCATCTGCAATAATACTGGTTACTCTTTCTTGTGATGG 60038 Query 11602 TGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCT 11661 | || | |||| || | ||| || |||||||||||||||| |||||| ||||| Sbjct 60039 TTTCTGATGCAGATGTGAGAATAGTAAGCATGCAAAATCACAATGTAGACCTTCATCTCT 60098 Query 11662 ACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAA 11721 ||| | |||||| ||||||||||| |||||||| | || ||||| |||| ||| || Sbjct 60099 GGATATCAATTCATTTGAAAATGTTAAACCGGGCATAAGACCACGTTTCTTTAACCAGAA 60158 Query 11722 TATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCT 11781 || || ||||| |||| || || || || || || || ||||| || || | ||| Sbjct 60159 AATCGCTGCAAAGCTACCACTGAAAAAAATGCCTTCAACGGCAGCAAAAGCCACCAATCT 60218 Query 11782 TTCTCC-ATATACCTTG-TTGCTAGAT-ATCCATTTTCTGGCCCAATCAGCTTTCTTTTT 11838 ||| || | | || || | || | ||||| ||| |||||||||||||||||| || Sbjct 60219 TTCGCCGAACGAGGATGTTTTCGAGCTAATCCACTTTAGGGCCCAATCAGCTTTCTTCTT 60278 Query 11839 TACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTAC 11898 || || ||| ||||| ||||||||||| || | |||||| | ||| || | Sbjct 60279 AACACACGGCATGGTTTCAATAGCGTTAAACAAGAACTCTTTTTCATTGGGATCGCTGAT 60338 Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 ||| || || || | | || |||||||| ||||| |||||||| || || || || || Sbjct 60339 ATACGTTTCAATAAGTTTGCTGTACATTTCAGAATGGATATTTTCAATTGCAATCTGGAA 60398 Query 11959 TCCATAGAAACATCGTGCCTCTGAACAC-TGTACATCCACATAAAATCTTTCCGCTAAAT 12017 |||||| ||||| || || || | ||| || || || | || | |||| | | || Sbjct 60399 TCCATAAAAACAACGAGCTTCAG-TCACTTGAACTTCTTGACTGAAACGTTCCACAAGAT 60457 Query 12018 TCTCATTTACAATACCATCACTAGATGCAAAAAATGCTA 12056 ||||||||||||||||||| | |||||||| |||| Sbjct 60458 TCTCATTTACAATACCATCTGAGGCAGCAAAAAAAGCTA 60496 >seq820 Length=22770 Score = 145 bits (160), Expect = 7e-30 Identities = 290/424 (68%), Gaps = 7/424 (2%) Strand=Plus/Minus Query 38095 TTTCTTAAGCTTAGAAAA-TCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACAT 38153 ||| || || || |||| || || | ||| || ||||||||||| | |||||| | | Sbjct 20000 TTTTTTGAGATTCAAAAAGTCAAAAACATCCGCATGCCATGGTTCCAAATAAATAGCGAA 19941 Query 38154 TGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCT 38213 ||||| |||||||||| ||| ||||||| | |||| | | || |||||| | | | | Sbjct 19940 AGCTCCAGGTCTTTTATTACCACCCTGATCCACATATTTGGCAGTATTATTAAACACTTT 19881 Query 38214 TAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGC 38273 | |||||| || | |||||| || |||| ||| | || | |||||||| || | || Sbjct 19880 AAGCATAGGAACGAGACCATTGGAAGTGCCATTTGTGCCAGCAATATAAGTGCCTTGTGC 19821 Query 38274 TCGTATATTA--CTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCAT 38331 || |||||| || ||| || ||||| ||||||| |||||| || | ||| ||| Sbjct 19820 TCTAATATTATGAACATTTACA--CCAATTCCTCCTGCATTTTTTGAAATGATAGCACAT 19763 Query 38332 TGTTTTA-ACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACA 38390 || | | || | || || || || | ||| || || || ||| | ||||| Sbjct 19762 TGAGTGAGACACTTGTAA-ATTCCCTCAAGACTATCCTCAGGCATCATTAGCAAGAAACA 19704 Query 38391 ACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAA 38450 | ||||| ||| || ||| || | || |||||||| |||||| ||||| |||| Sbjct 19703 AGAAGACAATTGTGGTCTTGGTGTAGCTGCATTAAATAACGTAGGACTGGCATGCGTGAA 19644 Query 38451 CCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAAT 38510 |||||| || | |||||| || ||||| || | | || || || | || ||||| Sbjct 19643 ATATTTTTGTGATAGATAATTGTAAGTTTCAATAGCGGCCTCAATGTCCTCTCCATGAAT 19584 Query 38511 ACCT 38514 ||| Sbjct 19583 GCCT 19580 Score = 131 bits (144), Expect = 2e-25 Identities = 176/244 (72%), Gaps = 1/244 (0%) Strand=Plus/Minus Query 37137 AACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAAT 37196 |||||| || || || || | ||||| | || || || || ||||| || |||||||| Sbjct 22052 AACCTGGAATTCGCCTGAAAGCACTCTACGAGTGTAAATGTTACTAGTGTAGGGTTCAAT 21993 Query 37197 GGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAG 37256 |||||| || | ||| ||||||| || || || |||||||| || || | ||| | Sbjct 21992 ACTCTCATTGTTGCCTAAAATTTGAGCAGTTGAAGCTGTAGGCATAGGAGCCAATAGCAA 21933 Query 37257 GCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATC 37316 | ||||| ||||||||| | |||| | ||| | | ||| ||||||||||||||| Sbjct 21932 GGAGTTTCTTAATCCATGTTTGGCAATTTTTACTTTCAATGCATCCCAATCCCATAAATC 21873 Query 37317 TGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTT 37376 || || ||| ||||||||| ||||||||||| |||| || || || | ||| || Sbjct 21872 TGACGGTTTCACGTCCCACATATCGTATTGTAGAATTCCTTGGCTTGCAGGCG-ATCCTT 21814 Query 37377 ATAT 37380 | || Sbjct 21813 AAAT 21810 Score = 118 bits (130), Expect = 1e-21 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| ||||| | ||| ||||| | ||| | ||||||||| | ||| |||||||||||| Sbjct 22457 TCAACGGTGAACTGTATGGGATTGGCTGCGGGTTTTGTTCTTAAATAGTACATTCCAGTT 22398 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || ||| | |||| |||||||| ||||| | | | | || ||||| || Sbjct 22397 TTAAGACCCTTTTTCCAACCGTAAAAGTGCATTGAGCATAATACCCCATAGGTAGGTTTC 22338 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | || | || | | |||| ||||||| ||||| || ||||| || || ||||| Sbjct 22337 GCGATGTGAATGTTTAAACTTTGAGTTTGATCGATAAAAGCGCCTCTATCCGCCGCCATG 22278 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATAT 37024 |||| || ||||||| || |||||||| ||||| || ||| ||||| || Sbjct 22277 TCTATGATTACCTTTTGAGGAATTTCCCAAACAGTTTTGTAGATTGTTTTTAAAT 22223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468431704122240