Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq2028 288 9e-73
seq820 145 7e-30
>seq2028
Length=154558
Score = 288 bits (318), Expect = 9e-73
Identities = 487/699 (70%), Gaps = 5/699 (1%)
Strand=Plus/Plus
Query 11362 TTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATA 11421
||| ||||| || || ||||||||| || || | ||||||| ||| |||||
Sbjct 59799 TTCAAAAAAGTTTGTTTTACCTTCTGTAGAAATGATCGTCATAAAGTCAAACGGATTCGT 59858
Query 11422 TACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTAT 11481
| || ||| ||| | || ||||| || |||| || | ||| || || ||||||||
Sbjct 59859 TGCACCATAGATTTTCTTGCAGCCTAATTCACTTAACAAACGATCAGCTACAAATTCTAT 59918
Query 11482 ATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAA 11541
||||||| |||| || |||||||| || || ||| || || | ||| | | |||
Sbjct 59919 ATACTGACACATCAATTTGCAATTCATTCCAATCAGACTGACTGGCAAAGCCTCAGACAA 59978
Query 11542 AAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGG 11601
||||| | |||||| |||| ||||| || || |||| ||| | |||||
Sbjct 59979 GAACTCTTGTTCTATTGTAACTGCATCTGCAATAATACTGGTTACTCTTTCTTGTGATGG 60038
Query 11602 TGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCT 11661
| || | |||| || | ||| || |||||||||||||||| |||||| |||||
Sbjct 60039 TTTCTGATGCAGATGTGAGAATAGTAAGCATGCAAAATCACAATGTAGACCTTCATCTCT 60098
Query 11662 ACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAA 11721
||| | |||||| ||||||||||| |||||||| | || ||||| |||| ||| ||
Sbjct 60099 GGATATCAATTCATTTGAAAATGTTAAACCGGGCATAAGACCACGTTTCTTTAACCAGAA 60158
Query 11722 TATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCT 11781
|| || ||||| |||| || || || || || || || ||||| || || | |||
Sbjct 60159 AATCGCTGCAAAGCTACCACTGAAAAAAATGCCTTCAACGGCAGCAAAAGCCACCAATCT 60218
Query 11782 TTCTCC-ATATACCTTG-TTGCTAGAT-ATCCATTTTCTGGCCCAATCAGCTTTCTTTTT 11838
||| || | | || || | || | ||||| ||| |||||||||||||||||| ||
Sbjct 60219 TTCGCCGAACGAGGATGTTTTCGAGCTAATCCACTTTAGGGCCCAATCAGCTTTCTTCTT 60278
Query 11839 TACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTAC 11898
|| || ||| ||||| ||||||||||| || | |||||| | ||| || |
Sbjct 60279 AACACACGGCATGGTTTCAATAGCGTTAAACAAGAACTCTTTTTCATTGGGATCGCTGAT 60338
Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958
||| || || || | | || |||||||| ||||| |||||||| || || || || ||
Sbjct 60339 ATACGTTTCAATAAGTTTGCTGTACATTTCAGAATGGATATTTTCAATTGCAATCTGGAA 60398
Query 11959 TCCATAGAAACATCGTGCCTCTGAACAC-TGTACATCCACATAAAATCTTTCCGCTAAAT 12017
|||||| ||||| || || || | ||| || || || | || | |||| | | ||
Sbjct 60399 TCCATAAAAACAACGAGCTTCAG-TCACTTGAACTTCTTGACTGAAACGTTCCACAAGAT 60457
Query 12018 TCTCATTTACAATACCATCACTAGATGCAAAAAATGCTA 12056
||||||||||||||||||| | |||||||| ||||
Sbjct 60458 TCTCATTTACAATACCATCTGAGGCAGCAAAAAAAGCTA 60496
>seq820
Length=22770
Score = 145 bits (160), Expect = 7e-30
Identities = 290/424 (68%), Gaps = 7/424 (2%)
Strand=Plus/Minus
Query 38095 TTTCTTAAGCTTAGAAAA-TCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACAT 38153
||| || || || |||| || || | ||| || ||||||||||| | |||||| | |
Sbjct 20000 TTTTTTGAGATTCAAAAAGTCAAAAACATCCGCATGCCATGGTTCCAAATAAATAGCGAA 19941
Query 38154 TGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCT 38213
||||| |||||||||| ||| ||||||| | |||| | | || |||||| | | | |
Sbjct 19940 AGCTCCAGGTCTTTTATTACCACCCTGATCCACATATTTGGCAGTATTATTAAACACTTT 19881
Query 38214 TAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGC 38273
| |||||| || | |||||| || |||| ||| | || | |||||||| || | ||
Sbjct 19880 AAGCATAGGAACGAGACCATTGGAAGTGCCATTTGTGCCAGCAATATAAGTGCCTTGTGC 19821
Query 38274 TCGTATATTA--CTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCAT 38331
|| |||||| || ||| || ||||| ||||||| |||||| || | ||| |||
Sbjct 19820 TCTAATATTATGAACATTTACA--CCAATTCCTCCTGCATTTTTTGAAATGATAGCACAT 19763
Query 38332 TGTTTTA-ACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACA 38390
|| | | || | || || || || | ||| || || || ||| | |||||
Sbjct 19762 TGAGTGAGACACTTGTAA-ATTCCCTCAAGACTATCCTCAGGCATCATTAGCAAGAAACA 19704
Query 38391 ACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAA 38450
| ||||| ||| || ||| || | || |||||||| |||||| ||||| ||||
Sbjct 19703 AGAAGACAATTGTGGTCTTGGTGTAGCTGCATTAAATAACGTAGGACTGGCATGCGTGAA 19644
Query 38451 CCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAAT 38510
|||||| || | |||||| || ||||| || | | || || || | || |||||
Sbjct 19643 ATATTTTTGTGATAGATAATTGTAAGTTTCAATAGCGGCCTCAATGTCCTCTCCATGAAT 19584
Query 38511 ACCT 38514
|||
Sbjct 19583 GCCT 19580
Score = 131 bits (144), Expect = 2e-25
Identities = 176/244 (72%), Gaps = 1/244 (0%)
Strand=Plus/Minus
Query 37137 AACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAAT 37196
|||||| || || || || | ||||| | || || || || ||||| || ||||||||
Sbjct 22052 AACCTGGAATTCGCCTGAAAGCACTCTACGAGTGTAAATGTTACTAGTGTAGGGTTCAAT 21993
Query 37197 GGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAG 37256
|||||| || | ||| ||||||| || || || |||||||| || || | ||| |
Sbjct 21992 ACTCTCATTGTTGCCTAAAATTTGAGCAGTTGAAGCTGTAGGCATAGGAGCCAATAGCAA 21933
Query 37257 GCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATC 37316
| ||||| ||||||||| | |||| | ||| | | ||| |||||||||||||||
Sbjct 21932 GGAGTTTCTTAATCCATGTTTGGCAATTTTTACTTTCAATGCATCCCAATCCCATAAATC 21873
Query 37317 TGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTT 37376
|| || ||| ||||||||| ||||||||||| |||| || || || | ||| ||
Sbjct 21872 TGACGGTTTCACGTCCCACATATCGTATTGTAGAATTCCTTGGCTTGCAGGCG-ATCCTT 21814
Query 37377 ATAT 37380
| ||
Sbjct 21813 AAAT 21810
Score = 118 bits (130), Expect = 1e-21
Identities = 167/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
||||| ||||| | ||| ||||| | ||| | ||||||||| | ||| ||||||||||||
Sbjct 22457 TCAACGGTGAACTGTATGGGATTGGCTGCGGGTTTTGTTCTTAAATAGTACATTCCAGTT 22398
Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909
|| || ||| | |||| |||||||| ||||| | | | | || ||||| ||
Sbjct 22397 TTAAGACCCTTTTTCCAACCGTAAAAGTGCATTGAGCATAATACCCCATAGGTAGGTTTC 22338
Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969
| || | || | | |||| ||||||| ||||| || ||||| || || |||||
Sbjct 22337 GCGATGTGAATGTTTAAACTTTGAGTTTGATCGATAAAAGCGCCTCTATCCGCCGCCATG 22278
Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATAT 37024
|||| || ||||||| || |||||||| ||||| || ||| ||||| ||
Sbjct 22277 TCTATGATTACCTTTTGAGGAATTTCCCAAACAGTTTTGTAGATTGTTTTTAAAT 22223
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468431704122240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |