Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2028 279 7e-70 seq820 156 6e-33 >seq2028 Length=154558 Score = 279 bits (308), Expect = 7e-70 Identities = 590/876 (67%), Gaps = 11/876 (1%) Strand=Plus/Plus Query 35873 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATG 35932 ||||| ||||| ||||| ||||| || |||||||||||| || || | ||| Sbjct 59782 TATTCGCCCACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTGTAGAAATGATCGTCATA 59841 Query 35933 AAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTA 35992 || || || ||||| | || ||| ||||| || | || |||||| | ||| | | Sbjct 59842 AAGTCAAACGGATTCGTTGCACCATAGATTTTCTTGCAGCCTAATTCACTTAACAAACGA 59901 Query 35993 TCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 36052 || || |||||||||||||| ||||| || ||||||||||| || || | ||| Sbjct 59902 TCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCATTCCAATCAGACTGACT 59961 Query 36053 GGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATATT 36112 || | |||| ||| | || |||||||| || | || || |||| |||||| || Sbjct 59962 GGCAAAGCCTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCTGCAATAATACTGGTT 60021 Query 36113 ACTGTTTCTTCACTCGGT---GGATACAATAAATGTTTAAACATCAAACATGCGAAATCG 36169 ||| |||||| ||| ||| | | |||| || | || ||||| ||||| Sbjct 60022 ACTCTTTCTTGTGATGGTTTCTGATGC---AGATGTGAGAATAGTAAGCATGCAAAATCA 60078 Query 36170 CAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGG 36229 || |||||||| || ||||| || ||||| || ||||| || | |||||||| || Sbjct 60079 CAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTAAACCGGGCATAAGA 60138 Query 36230 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACT 36289 ||||| || || | ||| || || | ||||| ||| || ||||| ||||| || Sbjct 60139 CCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAAAAAAATGCCTTCAACG 60198 Query 36290 GCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA--CTGTCATG--TATCCACTTTTG 36345 || ||||| || | | ||| || || ||| | | | || | ||||||||| | Sbjct 60199 GCAGCAAAAGCCACCAATCTTTCGCC-GAACGAGGATGTTTTCGAGCTAATCCACTTTAG 60257 Query 36346 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtt 36405 |||||||| || ||||| || ||||| ||||| || || ||||| ||||| | | | Sbjct 60258 GGCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGCGTTAAACAAGAACTC 60317 Query 36406 tttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAAT 36465 ||||||||| ||| | | ||| || ||||| | || |||||||| ||||| || Sbjct 60318 TTTTTCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGTACATTTCAGAATGGAT 60377 Query 36466 GTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGT 36525 |||||||| || || || ||||| || ||||| | ||| || || | || |||||| Sbjct 60378 ATTTTCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAGTCACTTGAACTTCTTG 60437 Query 36526 ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 36585 || || ||||| | | ||| ||||| || || || || ||| |||||||| || || Sbjct 60438 ACTGAAACGTTCCACAAGATTCTCATTTACAATACCATCTGAGGCAGCAAAAAAAGCTAA 60497 Query 36586 TACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTT 36645 || || || |||| | ||| | | | | ||||| | ||| | | ||| | Sbjct 60498 CACGTGCGAAATGAAATGTCGTTCTTCAGATTTCAGTTTCTCCCAGTGTCGTAGATCATG 60557 Query 36646 AGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 36705 | | |||||||| || |||||||| || || || || | || || | | ||| Sbjct 60558 GGTGAGGTCCACTTCCTCGGTAGTCCAAAAGGAAGCTTCAGCTTCCTTGTATTTCTGCCA 60617 Query 36706 GATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741 || || | ||| |||||| || | ||||||||| Sbjct 60618 AATATCTGGGAATTCAATTGGGAATAAAACAAATCT 60653 >seq820 Length=22770 Score = 156 bits (172), Expect = 6e-33 Identities = 247/351 (70%), Gaps = 6/351 (2%) Strand=Plus/Minus Query 65568 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 65627 ||||||| || |||||||||||||||||||||||||| || |||| |||||||| | | Sbjct 21554 CCTTGAATTCCTATACCGATAGGTCTATGTCTCTTATTGGAATTTTCTGCTTCTGGTAGA 21495 Query 65628 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 65687 || ||||| || ||||| ||||| ||||| | ||||| | || ||| | || Sbjct 21494 GGGTAATAGTTTATATCGATAATCTTATTCAAGTTTCTAGTCACTATTTTAGTGATATTT 21435 Query 65688 TTCAGTTTGAGAAAATCAAATCGCT---CATCT--ATT-ACAAACATGTTCAATGCAACA 65741 || ||||| ||||||||| | || |||| ||| ||||||||||||| | | Sbjct 21434 TTGAGTTTTTCAAAATCAAAACTCTTTCTATCTGCATTAACAAACATGTTCACAGGTATT 21375 Query 65742 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 65801 || ||||||||||| || || | || | | || |||| || || |||| ||| Sbjct 21374 GAAGCCAGATTACAGACAGCAATTTCGTCGGGCGACGTGTATTCTACGATTTCAGAACAA 21315 Query 65802 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 65861 || ||||| | || || ||| || || | ||||||| ||| | || || || || Sbjct 21314 AGGTTACTGCCTTTTATCACTCCCAAGTTCTTTTGATTAGATTTTCTATTGCAAGCGTCT 21255 Query 65862 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 65912 || ||||| || | |||||||||||||| | ||||| || ||| ||| Sbjct 21254 TTGTAAAGCATATAAGGAGTACCAGTTTCTACTTGAGAAGTTACAATGGCT 21204 Score = 132 bits (146), Expect = 6e-26 Identities = 262/388 (68%), Gaps = 0/388 (0%) Strand=Plus/Minus Query 66170 ATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTAT 66229 |||||| |||||||| || || || | | ||||||| | ||| || || |||||||| | Sbjct 19967 ATGCCATGGTTCCAAATAAATAGCGAAAGCTCCAGGTCTTTTATTACCACCCTGATCCAC 19908 Query 66230 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATT 66289 ||| | || || |||||| | ||| | | ||| |||| | ||||||||| || ||||| Sbjct 19907 ATATTTGGCAGTATTATTAAACACTTTAAGCATAGGAACGAGACCATTGGAAGTGCCATT 19848 Query 66290 GGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCC 66349 || || | ||||| | || ||| | ||||||| || || ||| ||||| || Sbjct 19847 TGTGCCAGCAATATAAGTGCCTTGTGCTCTAATATTATGAACATTTACACCAATTCCTCC 19788 Query 66350 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 66409 ||| |||| || || | || ||| | | | | || || ||||| | |||||| Sbjct 19787 TGCATTTTTTGAAATGATAGCACATTGAGTGAGACACTTGTAAATTCCCTCAAGACTATC 19728 Query 66410 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 66469 || ||| | || | ||||| ||||| ||| | | || | |||||||| Sbjct 19727 CTCAGGCATCATTAGCAAGAAACAAGAAGACAATTGTGGTCTTGGTGTAGCTGCATTAAA 19668 Query 66470 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 66529 ||| |||||| || ||||| || |||||| || || |||||| || |||||||| Sbjct 19667 TAACGTAGGACTGGCATGCGTGAAATATTTTTGTGATAGATAATTGTAAGTTTCAATAGC 19608 Query 66530 TGAGTCTATATCCCATTGATGAATTCCT 66557 | || || ||| | |||||| ||| Sbjct 19607 GGCCTCAATGTCCTCTCCATGAATGCCT 19580 Score = 111 bits (122), Expect = 2e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 66555 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 66614 |||| ||| || | ||| | ||| || ||||||||||| || || ||| || ||||| Sbjct 19526 CCTATTGCTACTCTCATAAGCATATGTTGAGGTCTTTCGACAATTTTGCCATTAATTTTT 19467 Query 66615 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 66674 || || || || |||||| |||||||||||||||||||||||| ||||| |||| || Sbjct 19466 AATAAATAAGACCTTTCCAGAGTTTTAAAACCAAAATAGTTGTAAGAAAAATCTCTGTCA 19407 Query 66675 TAAATAATAACCGAGTTGAGTTTATCCTTAT 66705 || |||||| || || ||| ||||||| Sbjct 19406 TAGATAATATTGGAATTTAGTCGGTCCTTAT 19376 Score = 104 bits (114), Expect = 3e-17 Identities = 137/188 (73%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || || ||||| || || | ||||| ||||||||||| ||||| || || ||||| | | Sbjct 22051 ACCTGGAATTCGCCTGAAAGCACTCTACGAGTGTAAATGTTACTAGTGTAGGGTTCAATA 21992 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 |||||| || || ||||||||||||||||| || || |||||||| |||| | || Sbjct 21991 CTCTCATTGTTGCCTAAAATTTGAGCAGTTGAAGCTGTAGGCATAGGAGCCAATAGCAAG 21932 Query 65301 CTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGAT 65358 ||||| | || ||||| | ||||| |||| | | ||||||| ||| | || Sbjct 21931 GAGTTTCTTAATCC--ATGTTTGGCAATTTTTACTTTCAATGCATCCCAATCCCATAAAT 21874 Query 65359 CCGACGGT 65366 | |||||| Sbjct 21873 CTGACGGT 21866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658042021064640