Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2259 114 1e-20 seq1411 87.8 2e-12 >seq2259 Length=79244 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| ||||| || ||||| ||| | |||| || || Sbjct 78080 ACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCGGAGAGGGTGCGACCATCCTCC 78139 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 || |||||||||||| |||||| |||||| || || || || || ||||||||||| || Sbjct 78140 AGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGGATACCTTCTTTGTC-CTG 78198 Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | |||| | |||| | ||| | ||||||| || || ||||||| ||| | ||||| Sbjct 78199 AATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCGACCTCAAGGGTGATGGTCTT 78258 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | ||||| ||||| |||||||| Sbjct 78259 ACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288 >seq1411 Length=135556 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 139574 TCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAG 139633 |||||||| ||||| || || | |||| |||||| |||||||||||||| || Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831 Query 139634 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTG 139692 || |||||||| || || || || || ||||| ||||| ||| | |||| ||| | | Sbjct 105830 ATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTC-CTGAATCTTTGCTTTCACGTT 105772 Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752 ||| | ||||||| || || || || | || | || || || || | ||||| || Sbjct 105771 TTCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCAC 105712 Query 139753 GAATATTTGCAT 139764 ||| || ||||| Sbjct 105711 GAAAATCTGCAT 105700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495965432083200