Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2028 275 9e-69 seq820 161 1e-34 >seq2028 Length=154558 Score = 275 bits (304), Expect = 9e-69 Identities = 588/875 (67%), Gaps = 9/875 (1%) Strand=Plus/Plus Query 49675 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATG 49734 ||||| ||||| ||||| ||||| || ||||| ||||| || || | ||| Sbjct 59782 TATTCGCCCACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTGTAGAAATGATCGTCATA 59841 Query 49735 AAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTA 49794 || ||||||||||| || || ||| ||||| || | || |||||| | ||| | | Sbjct 59842 AAGTCAAACGGATTCGTTGCACCATAGATTTTCTTGCAGCCTAATTCACTTAACAAACGA 59901 Query 49795 TCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 49854 || || |||||||||||||| ||||| || ||||||||||| || || | ||| Sbjct 59902 TCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCATTCCAATCAGACTGACT 59961 Query 49855 GGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTA 49914 || | |||| ||| | || |||||||| || | || ||||||| |||||| | Sbjct 59962 GGCAAAGCCTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCTGCAATAATACTGGTT 60021 Query 49915 ACGGTTTCTTCACTCGGT---GGATGCAATAAATGTTTAAACATCAAACATGCGAAATCG 49971 || |||||| ||| ||||| | |||| || | || ||||| ||||| Sbjct 60022 ACTCTTTCTTGTGATGGTTTCTGATGC---AGATGTGAGAATAGTAAGCATGCAAAATCA 60078 Query 49972 CAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGG 50031 || || ||||| || ||||| || | ||| || ||||| || | |||||||| || Sbjct 60079 CAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTAAACCGGGCATAAGA 60138 Query 50032 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACT 50091 ||||| || || | ||| || || | ||||| ||| || || || ||||| || Sbjct 60139 CCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAAAAAAATGCCTTCAACG 60198 Query 50092 GCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG-CGCTGTCATG--TATCCACTTTTGA 50148 || ||||| || || | ||| || || | || | | || | ||||||||| | Sbjct 60199 GCAGCAAAAGCCACCAATCTTTCGCCGAACGAGGATGTTTTCGAGCTAATCCACTTTAGG 60258 Query 50149 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 50208 |||||||| || ||||| || ||||| ||||| ||||| || || ||||| | | | | Sbjct 60259 GCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGCGTTAAACAAGAACTCT 60318 Query 50209 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 50268 |||||||| ||| | | ||| || || || | || |||||||| ||||| || Sbjct 60319 TTTTCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGTACATTTCAGAATGGATA 60378 Query 50269 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTA 50328 |||||||| || ||||| ||||| || ||||| | ||| || || | || |||||| | Sbjct 60379 TTTTCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAGTCACTTGAACTTCTTGA 60438 Query 50329 CAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 50388 | || ||||| | | ||| ||||| || || || || ||| |||||||| || || Sbjct 60439 CTGAAACGTTCCACAAGATTCTCATTTACAATACCATCTGAGGCAGCAAAAAAAGCTAAC 60498 Query 50389 ACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTA 50448 || || || |||||| ||| | | | | ||||| | ||| | | ||| | Sbjct 60499 ACGTGCGAAATGAAATGTCGTTCTTCAGATTTCAGTTTCTCCCAGTGTCGTAGATCATGG 60558 Query 50449 GATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 50508 | | || ||||| || |||||||| || || || || | || || | | ||| Sbjct 60559 GTGAGGTCCACTTCCTCGGTAGTCCAAAAGGAAGCTTCAGCTTCCTTGTATTTCTGCCAA 60618 Query 50509 ATGTCATGATATTGGATTGGGAAAATAACAAATCT 50543 || || | ||| |||||||| | ||||||||| Sbjct 60619 ATATCTGGGAATTCAATTGGGAATAAAACAAATCT 60653 >seq820 Length=22770 Score = 161 bits (178), Expect = 1e-34 Identities = 248/351 (71%), Gaps = 6/351 (2%) Strand=Plus/Minus Query 79447 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATA 79506 ||||||| || |||||||||||||||||||||||||| ||| |||| |||||||| | | Sbjct 21554 CCTTGAATTCCTATACCGATAGGTCTATGTCTCTTATTGGAATTTTCTGCTTCTGGTAGA 21495 Query 79507 GGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCC 79566 || ||||| || ||||| ||||| ||||| | || || | || ||| | || Sbjct 21494 GGGTAATAGTTTATATCGATAATCTTATTCAAGTTTCTAGTCACTATTTTAGTGATATTT 21435 Query 79567 TTTAGTTTGAGAAAATCAAATC---GTCCATCT--ATT-ACAAACATGTTCAACGCGACA 79620 || ||||| ||||||||| | || |||| ||| ||||||||||||| | | Sbjct 21434 TTGAGTTTTTCAAAATCAAAACTCTTTCTATCTGCATTAACAAACATGTTCACAGGTATT 21375 Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAG 79680 || ||||||||||| || || | || | | || |||| || ||||||| || Sbjct 21374 GAAGCCAGATTACAGACAGCAATTTCGTCGGGCGACGTGTATTCTACGATTTCAGAACAA 21315 Query 79681 AGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 79740 |||||||| | || || ||| || || | ||||||| ||| | || || || || Sbjct 21314 AGGTTACTGCCTTTTATCACTCCCAAGTTCTTTTGATTAGATTTTCTATTGCAAGCGTCT 21255 Query 79741 TTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 79791 || ||||| || | |||||||||||||| | ||||| || ||| ||| Sbjct 21254 TTGTAAAGCATATAAGGAGTACCAGTTTCTACTTGAGAAGTTACAATGGCT 21204 Score = 131 bits (144), Expect = 2e-25 Identities = 281/420 (67%), Gaps = 0/420 (0%) Strand=Plus/Minus Query 80017 tttttAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 80076 ||||| |||| | || | | || ||| | |||||| |||||||| || || || | | Sbjct 19999 TTTTTGAGATTCAAAAAGTCAAAAACATCCGCATGCCATGGTTCCAAATAAATAGCGAAA 19940 Query 80077 ACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 80136 |||| |||| ||| || || |||||||| | ||| | || || |||||| | ||| | Sbjct 19939 GCTCCAGGTCTTTTATTACCACCCTGATCCACATATTTGGCAGTATTATTAAACACTTTA 19880 Query 80137 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 80196 | ||| |||| | ||||||||| || ||||| || || | ||||| | || || Sbjct 19879 AGCATAGGAACGAGACCATTGGAAGTGCCATTTGTGCCAGCAATATAAGTGCCTTGTGCT 19820 Query 80197 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 80256 | ||||||| || || ||| ||||| ||||| |||| || || | || ||| | Sbjct 19819 CTAATATTATGAACATTTACACCAATTCCTCCTGCATTTTTTGAAATGATAGCACATTGA 19760 Query 80257 TTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 | | | || || ||||| | ||||| ||| ||| | || | ||||| | Sbjct 19759 GTGAGACACTTGTAAATTCCCTCAAGACTATCCTCAGGCATCATTAGCAAGAAACAAGAA 19700 Query 80317 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 80376 |||| ||| | | || | ||||||||||| |||||| || ||||| || || Sbjct 19699 GACAATTGTGGTCTTGGTGTAGCTGCATTAAATAACGTAGGACTGGCATGCGTGAAATAT 19640 Query 80377 TTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCT 80436 |||| || || |||||| || |||||||| | || || ||| | |||||| ||| Sbjct 19639 TTTTGTGATAGATAATTGTAAGTTTCAATAGCGGCCTCAATGTCCTCTCCATGAATGCCT 19580 Score = 114 bits (126), Expect = 2e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 80434 CCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 80493 |||| || || | ||| | ||| || ||||||||||| || || ||| ||| ||||| Sbjct 19526 CCTATTGCTACTCTCATAAGCATATGTTGAGGTCTTTCGACAATTTTGCCATTAATTTTT 19467 Query 80494 AACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 80553 || || ||||| |||||| |||||||||||||||||||||||| ||||| |||| || Sbjct 19466 AATAAATAAGACCTTTCCAGAGTTTTAAAACCAAAATAGTTGTAAGAAAAATCTCTGTCA 19407 Query 80554 TAAATAATAACCGAGTTGAGTTTATCCTTAT 80584 || |||||| || || ||| ||||||| Sbjct 19406 TAGATAATATTGGAATTTAGTCGGTCCTTAT 19376 Score = 107 bits (118), Expect = 3e-18 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || || ||||| || || | ||||| ||||||||||| ||||| || || ||||| | Sbjct 22051 ACCTGGAATTCGCCTGAAAGCACTCTACGAGTGTAAATGTTACTAGTGTAGGGTTCAATA 21992 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 ||||| || || ||||||||||||||||| || || |||||||| |||| | || Sbjct 21991 CTCTCATTGTTGCCTAAAATTTGAGCAGTTGAAGCTGTAGGCATAGGAGCCAATAGCAAG 21932 Query 79180 CTATTTCTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAAAGAT 79237 ||||| | || ||| | | ||||| |||| | | ||||||||||| | || Sbjct 21931 GAGTTTCTTAATCC--ATGTTTGGCAATTTTTACTTTCAATGCATCCCAATCCCATAAAT 21874 Query 79238 CAGACGGGACAACATTCCAAAGATCATATTGTAGAATACC 79277 | ||||| || | ||| | ||| ||||||||||| || Sbjct 21873 CTGACGGTTTCACGTCCCACATATCGTATTGTAGAATTCC 21834 Score = 87.8 bits (96), Expect = 3e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 79308 ATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGT 79367 |||||| || | ||||| |||||||||||||| ||||| ||||| |||||||||| ||| Sbjct 21750 ATAAGGACCATGTTTTTCAGCTAATTCACAACTAGCCTCCAATGCGCCGTAATAAAGGGT 21691 Query 79368 TTCGAAAATCTTCTTATTGAGATCTTGTGCTTC 79400 ||| ||||| | ||||| | |||| ||||| Sbjct 21690 TTCAAAAATTTGTTTATTCAAATCTGCAGCTTC 21658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718126079989440