Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2028 286 3e-72 >seq2028 Length=154558 Score = 286 bits (316), Expect = 3e-72 Identities = 622/921 (68%), Gaps = 10/921 (1%) Strand=Plus/Plus Query 13572 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13631 || || | ||| | |||||| | ||| | |||||||| ||||| ||||||||||| Sbjct 59767 ACACCAACTTTCTTATATTCGCCCACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTGTA 59826 Query 13632 GATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGT 13691 || || | |||||| ||||| ||||| ||| | | | ||| | || |||| | Sbjct 59827 GAAATGATCGTCATAAAGTCAAACGGATTCGTTGCACCATAGATTTTCTTGCAGCCTAAT 59886 Query 13692 TCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATA 13751 || || || | |||||| | ||| || ||||| ||| |||| || | |||||||| Sbjct 59887 TCACTTAACAAACGATCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCATT 59946 Query 13752 CCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCT 13811 || || || | || || | | | || || |||| |||||| | || || ||| Sbjct 59947 CCAATCAGACTGACTGGCAAAGCCTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCT 60006 Query 13812 TTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAA 13871 |||||| | || | | || | || || | | |||||| || | ||| Sbjct 60007 GCAATAATACTGGTTACTCTTTCTTGTGATGGTTTCTGATGCAGATGTGAGAATAGTAAG 60066 Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || |||||||||||||| || || |||||||| || | ||| |||||||||||||| Sbjct 60067 CATGCAAAATCACAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTAAA 60126 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA--TGACCCGGAAAAGA 13989 || ||||| | || ||||| |||||||| || || || ||||| | | | |||| | Sbjct 60127 CCGGGCATAAGACCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAAA--A 60184 Query 13990 ATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCT-TTTTTGTTC 14048 | || || ||||| |||||||| || | |||| ||| || ||||| | | |||| | | Sbjct 60185 AAATGCCTTCAACGGCAGCAAAAGCCACCAATCTTTCGCCGAACGAGGATGTTTTCGAGC 60244 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 | ||||| ||| ||||| |||| ||| || |||| | | ||| ||||||||||| Sbjct 60245 TA-ATCCACTTTAGGGCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGCG 60303 Query 14109 TTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14168 ||||| || | || || || || | | || || || ||||||||| ||| ||| Sbjct 60304 TTAAACAAGAACTCTTTTTCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGTAC 60363 Query 14169 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGAC 14228 |||||||| || || ||||| || || ||||| || |||||||| || | |||||| | | Sbjct 60364 ATTTCAGAATGGATATTTTCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAGTC 60423 Query 14229 CATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287 ||| ||||| || | ||| | ||| | | ||| ||||| || |||||||| || Sbjct 60424 ACTTGAACTTCTTGACTGAAA-CGTTCCACAAGATTCTCATTTACAATACCATCTGAGGC 60482 Query 14288 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCA 14347 |||||||| || || | || ||| || | | | |||||| || ||||| | ||| Sbjct 60483 AGCAAAAAAAGCTAACACGTGCGAAATGAAATGTCGTTCTTCAGATTTCAGTTTCTCCCA 60542 Query 14348 ATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14407 | || ||| | | || || ||||| || |||||||| ||| |||||| Sbjct 60543 GTGTCGTAGATCATGGGTGAGGTCCACTTCCTCGGTAGTCCAAAAGGAAGCTTCAGCTTC 60602 Query 14408 TTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC-TCGAAGATG 14466 || || | ||| || ||| || || || || | ||||||| |||| | | Sbjct 60603 CTTGTATTTCTGCCAAATATCTGGGAATTCAATTGGGAATAAAACAAATCTTCGAGGGT- 60661 Query 14467 TTTCTTTAAGAATTGGTTCCA 14487 ||||||| || | ||||||| Sbjct 60662 TTTCTTTCAGTAAAGGTTCCA 60682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479632678046400