Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq2028 286 3e-72
>seq2028
Length=154558
Score = 286 bits (316), Expect = 3e-72
Identities = 622/921 (68%), Gaps = 10/921 (1%)
Strand=Plus/Plus
Query 13572 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13631
|| || | ||| | |||||| | ||| | |||||||| ||||| |||||||||||
Sbjct 59767 ACACCAACTTTCTTATATTCGCCCACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTGTA 59826
Query 13632 GATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGT 13691
|| || | |||||| ||||| ||||| ||| | | | ||| | || |||| |
Sbjct 59827 GAAATGATCGTCATAAAGTCAAACGGATTCGTTGCACCATAGATTTTCTTGCAGCCTAAT 59886
Query 13692 TCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATA 13751
|| || || | |||||| | ||| || ||||| ||| |||| || | ||||||||
Sbjct 59887 TCACTTAACAAACGATCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCATT 59946
Query 13752 CCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCT 13811
|| || || | || || | | | || || |||| |||||| | || || |||
Sbjct 59947 CCAATCAGACTGACTGGCAAAGCCTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCT 60006
Query 13812 TTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAA 13871
|||||| | || | | || | || || | | |||||| || | |||
Sbjct 60007 GCAATAATACTGGTTACTCTTTCTTGTGATGGTTTCTGATGCAGATGTGAGAATAGTAAG 60066
Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931
|| |||||||||||||| || || |||||||| || | ||| ||||||||||||||
Sbjct 60067 CATGCAAAATCACAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTAAA 60126
Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA--TGACCCGGAAAAGA 13989
|| ||||| | || ||||| |||||||| || || || ||||| | | | |||| |
Sbjct 60127 CCGGGCATAAGACCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAAA--A 60184
Query 13990 ATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCT-TTTTTGTTC 14048
| || || ||||| |||||||| || | |||| ||| || ||||| | | |||| | |
Sbjct 60185 AAATGCCTTCAACGGCAGCAAAAGCCACCAATCTTTCGCCGAACGAGGATGTTTTCGAGC 60244
Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108
| ||||| ||| ||||| |||| ||| || |||| | | ||| |||||||||||
Sbjct 60245 TA-ATCCACTTTAGGGCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGCG 60303
Query 14109 TTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14168
||||| || | || || || || | | || || || ||||||||| ||| |||
Sbjct 60304 TTAAACAAGAACTCTTTTTCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGTAC 60363
Query 14169 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGAC 14228
|||||||| || || ||||| || || ||||| || |||||||| || | |||||| | |
Sbjct 60364 ATTTCAGAATGGATATTTTCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAGTC 60423
Query 14229 CATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287
||| ||||| || | ||| | ||| | | ||| ||||| || |||||||| ||
Sbjct 60424 ACTTGAACTTCTTGACTGAAA-CGTTCCACAAGATTCTCATTTACAATACCATCTGAGGC 60482
Query 14288 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCA 14347
|||||||| || || | || ||| || | | | |||||| || ||||| | |||
Sbjct 60483 AGCAAAAAAAGCTAACACGTGCGAAATGAAATGTCGTTCTTCAGATTTCAGTTTCTCCCA 60542
Query 14348 ATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14407
| || ||| | | || || ||||| || |||||||| ||| ||||||
Sbjct 60543 GTGTCGTAGATCATGGGTGAGGTCCACTTCCTCGGTAGTCCAAAAGGAAGCTTCAGCTTC 60602
Query 14408 TTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC-TCGAAGATG 14466
|| || | ||| || ||| || || || || | ||||||| |||| | |
Sbjct 60603 CTTGTATTTCTGCCAAATATCTGGGAATTCAATTGGGAATAAAACAAATCTTCGAGGGT- 60661
Query 14467 TTTCTTTAAGAATTGGTTCCA 14487
||||||| || | |||||||
Sbjct 60662 TTTCTTTCAGTAAAGGTTCCA 60682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479632678046400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |