Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2028 253 2e-62 >seq2028 Length=154558 Score = 253 bits (280), Expect = 2e-62 Identities = 608/917 (66%), Gaps = 2/917 (0%) Strand=Plus/Plus Query 13360 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGT 13419 || || | ||| | |||||| | ||| | |||||||||||||| ||||||||||| Sbjct 59767 ACACCAACTTTCTTATATTCGCCCACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTGTA 59826 Query 13420 GATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGT 13479 || || | |||||| || || ||||| |||| | | | ||| | || |||| | Sbjct 59827 GAAATGATCGTCATAAAGTCAAACGGATTCGTTGCACCATAGATTTTCTTGCAGCCTAAT 59886 Query 13480 TCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATA 13539 || ||| || | |||||| | ||| || ||||| ||| |||| || | |||||||| Sbjct 59887 TCACTTAACAAACGATCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCATT 59946 Query 13540 CCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCG 13599 || || || | || || | | || || || |||| |||||| | || || || Sbjct 59947 CCAATCAGACTGACTGGCAAAGCCTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCT 60006 Query 13600 TTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAA 13659 |||||| | | | | || | || || | | |||||| || | ||| Sbjct 60007 GCAATAATACTGGTTACTCTTTCTTGTGATGGTTTCTGATGCAGATGTGAGAATAGTAAG 60066 Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || |||||||||||||| || || |||||||| || | ||| |||||||||||||| Sbjct 60067 CATGCAAAATCACAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTAAA 60126 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 || ||||| | || ||||| |||||||| || || || || || || || || Sbjct 60127 CCGGGCATAAGACCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAAAAAA 60186 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT 13839 || || ||||| |||||||| || | | || ||| || ||||| | | |||| Sbjct 60187 ATGCCTTCAACGGCAGCAAAAGCCACCAATCTTTCGCCGAACGAGGATGTTTTCGAGCTA 60246 Query 13840 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTG 13899 ||||| ||| ||||| |||| ||| || |||| | | ||| ||||| || || || Sbjct 60247 ATCCACTTTAGGGCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGCGTTA 60306 Query 13900 AATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 13959 || || || || || || | | || || || ||||||||| ||| |||||| Sbjct 60307 AACAAGAACTCTTTTTCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGTACATT 60366 Query 13960 TCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14019 ||||| || || ||||| || || ||||| || ||||||||||| | |||||| | | | Sbjct 60367 TCAGAATGGATATTTTCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAGTCACT 60426 Query 14020 TGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGC 14078 || || || || | ||| | ||| | | || ||||| ||||||||||| || || Sbjct 60427 TGAACTTCTTGACTGAAA-CGTTCCACAAGATTCTCATTTACAATACCATCTGAGGCAGC 60485 Query 14079 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATC 14138 |||||| || || | || ||| || | | | |||||| || ||||| | ||| | Sbjct 60486 AAAAAAAGCTAACACGTGCGAAATGAAATGTCGTTCTTCAGATTTCAGTTTCTCCCAGTG 60545 Query 14139 GGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14198 || ||| | | || || ||||| || |||||||| ||| |||||| || Sbjct 60546 TCGTAGATCATGGGTGAGGTCCACTTCCTCGGTAGTCCAAAAGGAAGCTTCAGCTTCCTT 60605 Query 14199 ATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTGAAGATGTTTC 14258 || | ||| || ||| || || || || | ||||||||| || |||| Sbjct 60606 GTATTTCTGCCAAATATCTGGGAATTCAATTGGGAATAAAACAAATCTTCGAGGGTTTTC 60665 Query 14259 TTTAAGAATTGGCTCCA 14275 ||| || | || |||| Sbjct 60666 TTTCAGTAAAGGTTCCA 60682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478493704405440