Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq4409 100 2e-16
seq2259 98.7 8e-16
>seq4409
Length=33873
Score = 100 bits (110), Expect = 2e-16
Identities = 164/235 (70%), Gaps = 10/235 (4%)
Strand=Plus/Minus
Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940
|||| || | ||||| | ||||||||| | || |||||||| | ||| |||||||
Sbjct 17985 CGCCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGG 17926
Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000
|||| || ||| |||| |||| |||||||||||| || ||||||| ||| || || | ||
Sbjct 17925 ACAAAGTCCGTCCGTCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCG 17866
Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGC-----CAACTGTGTCGCCAGC 43055
| | ||||| || || ||| | | |||| || | | ||| ||||| |
Sbjct 17865 GAATTCCTTCCTTGTC-CTG----AATTTTTGCCTTTACATTTTCAATAGTGTCCGACGG 17811
Query 43056 CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110
||||| || | || || || || || |||| || || || ||||| ||||||
Sbjct 17810 TTCGACCTCAAGAGTGATGGTCTTGCCCGTTAAGGTCTTTACGAAAATCTGCATT 17756
>seq2259
Length=79244
Score = 98.7 bits (108), Expect = 8e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| || | || ||| | ||||| || | ||| ||||||||| | ||| || |||||
Sbjct 78062 CCACCTCTCAATCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCGGAG 78121
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| || || | || |||| |||||| || ||||| ||||| || ||||| || | ||
Sbjct 78122 AGGGTGCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGG 78181
Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061
| ||||||||| || |||| | | | || || | ||| |||||| | |||||
Sbjct 78182 ATACCTTCTTTGTC-CTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCGAC 78240
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | || || || || || || ||||||||||| |||||||||||
Sbjct 78241 CTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381295716313968
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |