Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq4409 100 2e-16 seq2259 98.7 8e-16 >seq4409 Length=33873 Score = 100 bits (110), Expect = 2e-16 Identities = 164/235 (70%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 |||| || | ||||| | ||||||||| | || |||||||| | ||| ||||||| Sbjct 17985 CGCCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGG 17926 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 |||| || ||| |||| |||| |||||||||||| || ||||||| ||| || || | || Sbjct 17925 ACAAAGTCCGTCCGTCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCG 17866 Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGC-----CAACTGTGTCGCCAGC 43055 | | ||||| || || ||| | | |||| || | | ||| ||||| | Sbjct 17865 GAATTCCTTCCTTGTC-CTG----AATTTTTGCCTTTACATTTTCAATAGTGTCCGACGG 17811 Query 43056 CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 ||||| || | || || || || || |||| || || || ||||| |||||| Sbjct 17810 TTCGACCTCAAGAGTGATGGTCTTGCCCGTTAAGGTCTTTACGAAAATCTGCATT 17756 >seq2259 Length=79244 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| | ||||| || | ||| ||||||||| | ||| || ||||| Sbjct 78062 CCACCTCTCAATCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCGGAG 78121 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || |||| |||||| || ||||| ||||| || ||||| || | || Sbjct 78122 AGGGTGCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGG 78181 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||||||| || |||| | | | || || | ||| |||||| | ||||| Sbjct 78182 ATACCTTCTTTGTC-CTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCGAC 78240 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || ||||||||||| ||||||||||| Sbjct 78241 CTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381295716313968