Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2028 269 4e-67 seq820 161 1e-34 >seq2028 Length=154558 Score = 269 bits (298), Expect = 4e-67 Identities = 588/876 (67%), Gaps = 11/876 (1%) Strand=Plus/Plus Query 41780 TATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCCATG 41839 ||||| ||||| ||||| ||||| || || || ||||| || || | ||| Sbjct 59782 TATTCGCCCACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTGTAGAAATGATCGTCATA 59841 Query 41840 AAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTA 41899 || ||||||||||| || || ||| ||||| || | || |||||| | ||| | | Sbjct 59842 AAGTCAAACGGATTCGTTGCACCATAGATTTTCTTGCAGCCTAATTCACTTAACAAACGA 59901 Query 41900 TCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 41959 || || | ||||||||||| ||||| || ||||||||||| || || | ||| Sbjct 59902 TCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCATTCCAATCAGACTGACT 59961 Query 41960 GGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTT 42019 || | |||| ||| | || |||||||| || | || || |||| |||||| || Sbjct 59962 GGCAAAGCCTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCTGCAATAATACTGGTT 60021 Query 42020 ACTGTTTCTTCACTCGGT---GGATACAATAAATGTTTAAACATCAAACATGCGAAATCG 42076 ||| |||||| ||| ||| | | |||| || | || ||||| ||||| Sbjct 60022 ACTCTTTCTTGTGATGGTTTCTGATGC---AGATGTGAGAATAGTAAGCATGCAAAATCA 60078 Query 42077 CAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGG 42136 || || ||||| |||||||| || ||||| || ||||| || | |||||||| || Sbjct 60079 CAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTAAACCGGGCATAAGA 60138 Query 42137 CCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACT 42196 ||||| || || | ||| || || | ||||| ||| || || || ||||| || Sbjct 60139 CCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAAAAAAATGCCTTCAACG 60198 Query 42197 GCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA--CTGTCATG--TATCCACTTTTG 42252 || ||||| || | | ||| || || ||| | | | || | ||||||||| | Sbjct 60199 GCAGCAAAAGCCACCAATCTTTCGCC-GAACGAGGATGTTTTCGAGCTAATCCACTTTAG 60257 Query 42253 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 42312 |||||||| || ||||| || ||||| ||||| ||||| || || ||||| | | | Sbjct 60258 GGCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGCGTTAAACAAGAACTC 60317 Query 42313 tttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAAT 42372 ||||||||| ||| | | ||| || || || | || |||||||| ||||| || Sbjct 60318 TTTTTCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGTACATTTCAGAATGGAT 60377 Query 42373 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGT 42432 |||||||| || ||||| ||||| || ||||| | || || || || || |||||| Sbjct 60378 ATTTTCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAGTCACTTGAACTTCTTG 60437 Query 42433 ACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 42492 || || ||||| | | ||| || || || || || || ||| |||||||| || || Sbjct 60438 ACTGAAACGTTCCACAAGATTCTCATTTACAATACCATCTGAGGCAGCAAAAAAAGCTAA 60497 Query 42493 TACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTT 42552 || || || |||| | ||| || | | | | ||| | ||| | | ||| | Sbjct 60498 CACGTGCGAAATGAAATGTCGTTCTTCAGATTTCAGTTTCTCCCAGTGTCGTAGATCATG 60557 Query 42553 AGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCA 42612 | | || ||||| || |||||||| || ||||| || | || || | | ||| Sbjct 60558 GGTGAGGTCCACTTCCTCGGTAGTCCAAAAGGAAGCTTCAGCTTCCTTGTATTTCTGCCA 60617 Query 42613 GATATCATGATATTGAATTGGGAAAATAACAAATCT 42648 ||||| | ||| ||||||||| | ||||||||| Sbjct 60618 AATATCTGGGAATTCAATTGGGAATAAAACAAATCT 60653 >seq820 Length=22770 Score = 161 bits (178), Expect = 1e-34 Identities = 248/351 (71%), Gaps = 6/351 (2%) Strand=Plus/Minus Query 71530 CCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATA 71589 ||||||| || |||||||||||||| ||||||||||| ||| |||| |||||||| | | Sbjct 21554 CCTTGAATTCCTATACCGATAGGTCTATGTCTCTTATTGGAATTTTCTGCTTCTGGTAGA 21495 Query 71590 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCC 71649 || ||||| || ||||| ||||| ||||| | ||||| | || ||| | || Sbjct 21494 GGGTAATAGTTTATATCGATAATCTTATTCAAGTTTCTAGTCACTATTTTAGTGATATTT 21435 Query 71650 TTTAGTTTGAGAAAATCAAATCTC---CCATCT--ATT-ACAAACACGTTCAAGGCAACA 71703 || ||||| ||||||||| ||| | |||| ||| ||||||| ||||| | | Sbjct 21434 TTGAGTTTTTCAAAATCAAAACTCTTTCTATCTGCATTAACAAACATGTTCACAGGTATT 21375 Query 71704 GATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAA 71763 || ||||||||||| || || | || | | | |||| || ||||||| ||| Sbjct 21374 GAAGCCAGATTACAGACAGCAATTTCGTCGGGCGACGTGTATTCTACGATTTCAGAACAA 21315 Query 71764 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 71823 || ||||| | || || ||| || || | ||||||| ||| | || || || || Sbjct 21314 AGGTTACTGCCTTTTATCACTCCCAAGTTCTTTTGATTAGATTTTCTATTGCAAGCGTCT 21255 Query 71824 TTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 71874 || ||||| ||| | |||||||||||||| | ||||| || ||| ||| Sbjct 21254 TTGTAAAGCATATAAGGAGTACCAGTTTCTACTTGAGAAGTTACAATGGCT 21204 Score = 129 bits (142), Expect = 8e-25 Identities = 242/355 (68%), Gaps = 7/355 (2%) Strand=Plus/Minus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || ||||| |||||| || ||||| ||| || | || ||||||||| || ||||| ||| Sbjct 22451 GTGAACTGTATGGGATTGGCTGCGGGTTTTGTTCTTAAATAGTACATTCCAGTTTTAAGA 22392 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920 || |||| |||||||| ||||| || | |||| |||| | || ||| Sbjct 22391 CCCTTTTTCCAACCGTAAAAGTGCATTGAGCATAATACCCCATAGGTAGGTTTCGCGATG 22332 Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980 ||||| || | ||| |||||||||| || || || || || || ||||| | |||| Sbjct 22331 TGAATGTTTAAACTTTGAGTTTGATCGATAAAAGCGCCTCTATCCGCCGCCATGTCTATG 22272 Query 70981 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGA--- 71037 || |||||| ||||||||||||| |||||| || | | || | ||| ||| Sbjct 22271 ATTACCTTTTGAGGAATTTCCCAAACAGTTTTGTAGATTGTTTTTAAATCACTAGGAATT 22212 Query 71038 --AGGTTTGTATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCAT 71095 |||| || || || || || || | || || | ||| |||||| ||| | |||| Sbjct 22211 CCAGGTATG--TTTTGGATTGACCCTCGATTGGCTAGAATTTGATTTTTCATCACATCAT 22154 Query 71096 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAA 71150 ||| ||| ||| || ||||| || | || | ||| |||| || | ||||| Sbjct 22153 CCCACAATCCTCTTTCAGTTAAGTCTTTTAGTAAGTGATGATTGACGATCTGAAA 22099 Score = 120 bits (132), Expect = 4e-22 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 72576 |||| || || | ||| | |||||| ||||||||||| || || ||| ||| ||||| Sbjct 19526 CCTATTGCTACTCTCATAAGCATATGTTGAGGTCTTTCGACAATTTTGCCATTAATTTTT 19467 Query 72577 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 72636 || || || || |||||| |||||||||||||||||||||||| ||||| |||| || Sbjct 19466 AATAAATAAGACCTTTCCAGAGTTTTAAAACCAAAATAGTTGTAAGAAAAATCTCTGTCA 19407 Query 72637 TAAATAATAACCGAATTGAGTTTATCCTTAT 72667 || |||||| ||||| ||| ||||||| Sbjct 19406 TAGATAATATTGGAATTTAGTCGGTCCTTAT 19376 Score = 113 bits (124), Expect = 6e-20 Identities = 268/405 (66%), Gaps = 0/405 (0%) Strand=Plus/Minus Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159 ||||| |||| | || | | || ||| | |||||| |||||||| || || || | | Sbjct 19999 TTTTTGAGATTCAAAAAGTCAAAAACATCCGCATGCCATGGTTCCAAATAAATAGCGAAA 19940 Query 72160 ACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 72219 |||| || | ||| || || |||||||| | ||| | || || |||||| | ||| | Sbjct 19939 GCTCCAGGTCTTTTATTACCACCCTGATCCACATATTTGGCAGTATTATTAAACACTTTA 19880 Query 72220 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 72279 | ||| |||| | ||||||||| | ||||| || || | ||||| | || || Sbjct 19879 AGCATAGGAACGAGACCATTGGAAGTGCCATTTGTGCCAGCAATATAAGTGCCTTGTGCT 19820 Query 72280 CGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 72339 | |||||| || || ||| ||||| ||||| |||| || || | || ||| | Sbjct 19819 CTAATATTATGAACATTTACACCAATTCCTCCTGCATTTTTTGAAATGATAGCACATTGA 19760 Query 72340 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 | | | || || ||||| | |||||| || ||| | || | ||||| | Sbjct 19759 GTGAGACACTTGTAAATTCCCTCAAGACTATCCTCAGGCATCATTAGCAAGAAACAAGAA 19700 Query 72400 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 72459 |||| ||| | | || | ||||||||||| |||||| || ||||| || || Sbjct 19699 GACAATTGTGGTCTTGGTGTAGCTGCATTAAATAACGTAGGACTGGCATGCGTGAAATAT 19640 Query 72460 TTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC 72504 |||| || || |||||| || |||||||| | || || ||| Sbjct 19639 TTTTGTGATAGATAATTGTAAGTTTCAATAGCGGCCTCAATGTCC 19595 Score = 102 bits (112), Expect = 1e-16 Identities = 140/191 (73%), Gaps = 10/191 (5%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || || ||||| || || | ||||||||||||||||| ||||| || || ||||| | Sbjct 22051 ACCTGGAATTCGCCTGAAAGCACTCTACGAGTGTAAATGTTACTAGTGTAGGGTTCAATA 21992 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG- 71261 |||||| || || ||||||||||||||||| || || |||||||| | ||||||| Sbjct 21991 CTCTCATTGTTGCCTAAAATTTGAGCAGTTGAAGCTGTAGGCATAGGAG---CCAATAGC 21935 Query 71262 -ACTA-TTTCTAAGACCATGTGATCGG--ATTTTATCTTTTAGAGATTCCCAATTCCAAA 71317 | | ||||| | |||||| | || ||||| |||| | | ||||||| ||| | Sbjct 21934 AAGGAGTTTCTTAATCCATGT--TTGGCAATTTTTACTTTCAATGCATCCCAATCCCATA 21877 Query 71318 GATCCGATGGT 71328 ||| || ||| Sbjct 21876 AATCTGACGGT 21866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671005844640960