Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq820 105 7e-18 seq2259 100 3e-16 seq1411 96.9 4e-15 >seq820 Length=22770 Score = 105 bits (116), Expect = 7e-18 Identities = 228/340 (67%), Gaps = 12/340 (4%) Strand=Plus/Minus Query 156886 ACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAAT 156945 ||||||||| || || ||||| || | ||| | | |||| || |||| ||| | | Sbjct 21555 ACCTTGAATTCCTATACCGATAGGTCTATGTCTCTTATTGGAATTTTCTGCTTCTGGTAG 21496 Query 156946 AGGGTAGAAATTGCGATCAATAATTTTATTCAAA---CTATCCACTACATGTTTGACCAC 157002 |||||| | || ||| ||||| |||||||| ||| ||||| | ||| Sbjct 21495 AGGGTAATAGTTTATATCGATAATCTTATTCAAGTTTCTAGTCACTATTTTAGTGAT--- 21439 Query 157003 AGTGTGCAATAGTTGAAAATCAAAAGT------ATCATTATTGATATATTTATTGACGGC 157056 | | | | | || |||||||||| | ||| ||| | | | | || || | Sbjct 21438 ATTTTTGAGTTTTTCAAAATCAAAACTCTTTCTATCTGCATTAACAAACATGTTCACAGG 21379 Query 157057 AATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGC 157116 || || || |||||||| || ||| |||||||||||| |||| ||| ||||| | Sbjct 21378 TATTGAAGCCAGATTACAGACAGCAATTTCGTCGGGCGACGTGTATTCTACGATTTCAGA 21319 Query 157117 ACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGC 157176 ||| | || |||| |||||||| ||| | || ||||||| ||| | |||||||| Sbjct 21318 ACAAAGGTTACTGCCTTTTATCACTCCCAAGTTCTTTTGATTAGATTTTCTATTGCAAGC 21259 Query 157177 GTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGA 157216 ||| ||||| | ||| || || || || ||||| ||||| Sbjct 21258 GTCTTTGTAAAGCATATAAGGAGTACCAGTTTCTACTTGA 21219 >seq2259 Length=79244 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 || || ||||||||||||||| |||||| |||||| || || || || || ||||||||| Sbjct 78134 TCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGGATACCTTCTTTG 78193 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || |||||| |||| | ||| | ||||| | ||||| || |||| || | Sbjct 78194 TCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCGACCTCAAGGGTGATG 78253 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || || | ||||| ||||| |||||||| Sbjct 78254 GTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288 >seq1411 Length=135556 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 142994 TCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAG 143053 ||||||||||||||||| || | |||| |||||| || ||||||||||| || Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831 Query 143054 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT 143113 || |||||||| || || || || || ||||| ||||| ||| ||| ||| | | | Sbjct 105830 ATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACGTTT 105771 Query 143114 TCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACG 143173 || | ||||| | ||||| ||||| | || | || || || || | ||||| ||| Sbjct 105770 TCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCACG 105711 Query 143174 AATATTTGCAT 143184 || || ||||| Sbjct 105710 AAAATCTGCAT 105700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506913656238720