Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq820 105 7e-18
seq2259 100 3e-16
seq1411 96.9 4e-15
>seq820
Length=22770
Score = 105 bits (116), Expect = 7e-18
Identities = 228/340 (67%), Gaps = 12/340 (4%)
Strand=Plus/Minus
Query 156886 ACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAAT 156945
||||||||| || || ||||| || | ||| | | |||| || |||| ||| | |
Sbjct 21555 ACCTTGAATTCCTATACCGATAGGTCTATGTCTCTTATTGGAATTTTCTGCTTCTGGTAG 21496
Query 156946 AGGGTAGAAATTGCGATCAATAATTTTATTCAAA---CTATCCACTACATGTTTGACCAC 157002
|||||| | || ||| ||||| |||||||| ||| ||||| | |||
Sbjct 21495 AGGGTAATAGTTTATATCGATAATCTTATTCAAGTTTCTAGTCACTATTTTAGTGAT--- 21439
Query 157003 AGTGTGCAATAGTTGAAAATCAAAAGT------ATCATTATTGATATATTTATTGACGGC 157056
| | | | | || |||||||||| | ||| ||| | | | | || || |
Sbjct 21438 ATTTTTGAGTTTTTCAAAATCAAAACTCTTTCTATCTGCATTAACAAACATGTTCACAGG 21379
Query 157057 AATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGC 157116
|| || || |||||||| || ||| |||||||||||| |||| ||| ||||| |
Sbjct 21378 TATTGAAGCCAGATTACAGACAGCAATTTCGTCGGGCGACGTGTATTCTACGATTTCAGA 21319
Query 157117 ACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGC 157176
||| | || |||| |||||||| ||| | || ||||||| ||| | ||||||||
Sbjct 21318 ACAAAGGTTACTGCCTTTTATCACTCCCAAGTTCTTTTGATTAGATTTTCTATTGCAAGC 21259
Query 157177 GTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGA 157216
||| ||||| | ||| || || || || ||||| |||||
Sbjct 21258 GTCTTTGTAAAGCATATAAGGAGTACCAGTTTCTACTTGA 21219
>seq2259
Length=79244
Score = 100 bits (110), Expect = 3e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089
|| || ||||||||||||||| |||||| |||||| || || || || || |||||||||
Sbjct 78134 TCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGGATACCTTCTTTG 78193
Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149
|| |||||| |||| | ||| | ||||| | ||||| || |||| || |
Sbjct 78194 TCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCGACCTCAAGGGTGATG 78253
Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
||||| || || | ||||| ||||| ||||||||
Sbjct 78254 GTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288
>seq1411
Length=135556
Score = 96.9 bits (106), Expect = 4e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 142994 TCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAG 143053
||||||||||||||||| || | |||| |||||| || ||||||||||| ||
Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831
Query 143054 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT 143113
|| |||||||| || || || || || ||||| ||||| ||| ||| ||| | | |
Sbjct 105830 ATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACGTTT 105771
Query 143114 TCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACG 143173
|| | ||||| | ||||| ||||| | || | || || || || | ||||| |||
Sbjct 105770 TCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCACG 105711
Query 143174 AATATTTGCAT 143184
|| || |||||
Sbjct 105710 AAAATCTGCAT 105700
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506913656238720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |