Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2028 214 3e-50 seq173 122 1e-22 >seq2028 Length=154558 Score = 214 bits (236), Expect = 3e-50 Identities = 586/872 (67%), Gaps = 42/872 (5%) Strand=Plus/Minus Query 125016 GACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGAT 125075 || |||||| | | ||||| | ||| | || ||||||||||| ||| || || || Sbjct 60623 GATATTTGGCAGAAATACAAGGAAGCTGAAGCTTCCTTTTGGACTACCGAGGAAGTGGAC 60564 Query 125076 CTGTCCAAGGACCTGTACG--ATTGGGAGACTCGTTTGA---CTGAAACTGAGCGAGAGT 125130 || || | || | |||| | ||||||| | ||| ||||| || ||| | | Sbjct 60563 CTCACCCATGA--TCTACGACACTGGGAGAAAC---TGAAATCTGAA---GAACGACATT 60512 Query 125131 TTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGT 125190 | || |||||| | || || || ||||| | ||| ||||| || || || || ||||| Sbjct 60511 TCATTTCGCACGTGTTAGCTTTTTTTGCTGCCTCAGATGGTATTGTAAATGAGAATCTTG 60452 Query 125191 TGACACGATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCA 125248 || ||| ||| ||||| |||| | | | || | ||| || ||||| |||||||| Sbjct 60451 TGGAACGTTTCAGTCAAGAAGTTCA-AGTGACTGAAG-CTCGTTGTTTTTATGGATTCCA 60394 Query 125249 AATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCG 125308 || ||||| || | || || ||||||||| | ||| ||||| | ||| || | Sbjct 60393 GATTGCAATTGAAAATATCCATTCTGAAATGTACAGCAAACTTATTGAAACGTATATCAG 60334 Query 125309 CGATCCGCAACG-TAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTA 125367 |||||| ||| | ||| | | | |||||||| || || || |||||| | | | Sbjct 60333 CGATCC-CAATGAAAAAGAGTTCTTGTTTAACGCTATTGAAACCATGCCGTGTGTTAAGA 60275 Query 125368 AAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAA-GTCTTCGTACGCCGACAGA 125426 | || ||| | |||| | |||||| | ||| || || |||| || ||| ||| Sbjct 60274 AGAAAGCTGATTGGGCCCTAAAGTGGAT-TAGCTCGAAAACATCCTCGTTCGGCGAAAGA 60216 Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 ||||||| || || ||||| || ||||| || || ||||| ||||| || || || Sbjct 60215 TTGGTGGCTTTTGCTGCCGTTGAAGGCATTTTTTTCAGTGGTAGCTTTGCAGCGATTTTC 60156 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||| | ||||| || || || |||||||| | || || || || ||||| || Sbjct 60155 TGGTTAAAGAAACGTGGTCTTATGCCCGGTTTAACATTTTCAAATGAATTGATATCCAGA 60096 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTC-TACTGTTTCGCAACTATCTGCGTCCCGA 125605 || || || ||||| ||||| |||| ||| | |||| ||| || |||||| || | Sbjct 60095 GATGAAGGTCTACATTGTGATTTTG-CATGCTTACT-ATTCTCA--CATCTGCATC---A 60043 Query 125606 GTGCAGATCCAGC-GATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAAC 125664 | | ||| | | |||| || | || ||| | | ||||| || | ||||||| Sbjct 60042 G----AAACCATCACAAGAAAGAGTAACCAGTATTATTGCAGATGCAGTTACAATAGAAC 59987 Query 125665 AAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGT 125724 ||||||| | | || | | || ||||| ||||||| ||||| ||||| | |||| Sbjct 59986 AAGAGTTCTTGTCTGAGGCTTTGCCAGTCAGTCTGATTGGAATGAATTGCAAATTGATGT 59927 Query 125725 GCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATT-GGCCGCAAG--- 125780 | |||| ||||| ||||| || |||||| ||| ||| ||| ||| ||||| Sbjct 59926 GTCAGTATATAGAATTTGTAGCTGATCGT---TTGT-TAAGTGAATTAGGCTGCAAGAAA 59871 Query 125781 ATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACC 125840 || || || | |||||| ||||| || ||||| | ||| || ||| ||||| || Sbjct 59870 ATCTATGGTGCAACGAATCCGTTTGACTTTATGACGATCATTTCTACAGAAGGTAAAACA 59811 Query 125841 AACTTTTTCGAGAAGAAGGTCAGCGAGTACAA 125872 |||||||| || ||||| || |||| || || Sbjct 59810 AACTTTTTTGAAAAGAAAGTGGGCGAATATAA 59779 >seq173 Length=58411 Score = 122 bits (134), Expect = 1e-22 Identities = 180/254 (71%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 70155 TTGATCAATTG---CAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGA 70211 ||||||||||| ||| ||||| | || |||| || ||| |||||||||| || | Sbjct 29454 TTGATCAATTGGCACAGGTAATCAATACCA---TCAAAACTAATTCAACAGATAGAAGAA 29398 Query 70212 TCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCACT 70271 | | ||||| ||||||||||| | ||| | | ||||||| ||||| || || || | Sbjct 29397 TGATTATGTGTGCATGGAATCCTACGGATCTCCCTGAAATGGCTCTACCGCCTTGCCATT 29338 Query 70272 GTTTGGCTCAGTTTTACTCGTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTG 70331 |||| | |||||||| | | |||| |||| || || | |||||||| | Sbjct 29337 GTTTAGTGCAGTTTTATGTGGCCAATGGTGAATTATCCTGTCAGTTATATCAGAGATCAG 29278 Query 70332 CCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGA 70391 | || ||||| || || || || ||||| ||||| |||||| || |||| || | |||| Sbjct 29277 CTGATATGGGACTTGGAGTTCCTTTTAATATTGCTAGCTATGCTTTGTTAACTTATATGA 29218 Query 70392 TTGCTCACATTACC 70405 | ||||| ||||| Sbjct 29217 TAGCTCATGTTACC 29204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740911951536960