Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq2028 214 3e-50
seq173 122 1e-22
>seq2028
Length=154558
Score = 214 bits (236), Expect = 3e-50
Identities = 586/872 (67%), Gaps = 42/872 (5%)
Strand=Plus/Minus
Query 125016 GACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGAT 125075
|| |||||| | | ||||| | ||| | || ||||||||||| ||| || || ||
Sbjct 60623 GATATTTGGCAGAAATACAAGGAAGCTGAAGCTTCCTTTTGGACTACCGAGGAAGTGGAC 60564
Query 125076 CTGTCCAAGGACCTGTACG--ATTGGGAGACTCGTTTGA---CTGAAACTGAGCGAGAGT 125130
|| || | || | |||| | ||||||| | ||| ||||| || ||| | |
Sbjct 60563 CTCACCCATGA--TCTACGACACTGGGAGAAAC---TGAAATCTGAA---GAACGACATT 60512
Query 125131 TTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGT 125190
| || |||||| | || || || ||||| | ||| ||||| || || || || |||||
Sbjct 60511 TCATTTCGCACGTGTTAGCTTTTTTTGCTGCCTCAGATGGTATTGTAAATGAGAATCTTG 60452
Query 125191 TGACACGATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCA 125248
|| ||| ||| ||||| |||| | | | || | ||| || ||||| ||||||||
Sbjct 60451 TGGAACGTTTCAGTCAAGAAGTTCA-AGTGACTGAAG-CTCGTTGTTTTTATGGATTCCA 60394
Query 125249 AATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCG 125308
|| ||||| || | || || ||||||||| | ||| ||||| | ||| || |
Sbjct 60393 GATTGCAATTGAAAATATCCATTCTGAAATGTACAGCAAACTTATTGAAACGTATATCAG 60334
Query 125309 CGATCCGCAACG-TAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTA 125367
|||||| ||| | ||| | | | |||||||| || || || |||||| | | |
Sbjct 60333 CGATCC-CAATGAAAAAGAGTTCTTGTTTAACGCTATTGAAACCATGCCGTGTGTTAAGA 60275
Query 125368 AAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAA-GTCTTCGTACGCCGACAGA 125426
| || ||| | |||| | |||||| | ||| || || |||| || ||| |||
Sbjct 60274 AGAAAGCTGATTGGGCCCTAAAGTGGAT-TAGCTCGAAAACATCCTCGTTCGGCGAAAGA 60216
Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486
||||||| || || ||||| || ||||| || || ||||| ||||| || || ||
Sbjct 60215 TTGGTGGCTTTTGCTGCCGTTGAAGGCATTTTTTTCAGTGGTAGCTTTGCAGCGATTTTC 60156
Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546
||| | ||||| || || || |||||||| | || || || || ||||| ||
Sbjct 60155 TGGTTAAAGAAACGTGGTCTTATGCCCGGTTTAACATTTTCAAATGAATTGATATCCAGA 60096
Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTC-TACTGTTTCGCAACTATCTGCGTCCCGA 125605
|| || || ||||| ||||| |||| ||| | |||| ||| || |||||| || |
Sbjct 60095 GATGAAGGTCTACATTGTGATTTTG-CATGCTTACT-ATTCTCA--CATCTGCATC---A 60043
Query 125606 GTGCAGATCCAGC-GATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAAC 125664
| | ||| | | |||| || | || ||| | | ||||| || | |||||||
Sbjct 60042 G----AAACCATCACAAGAAAGAGTAACCAGTATTATTGCAGATGCAGTTACAATAGAAC 59987
Query 125665 AAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGT 125724
||||||| | | || | | || ||||| ||||||| ||||| ||||| | ||||
Sbjct 59986 AAGAGTTCTTGTCTGAGGCTTTGCCAGTCAGTCTGATTGGAATGAATTGCAAATTGATGT 59927
Query 125725 GCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATT-GGCCGCAAG--- 125780
| |||| ||||| ||||| || |||||| ||| ||| ||| ||| |||||
Sbjct 59926 GTCAGTATATAGAATTTGTAGCTGATCGT---TTGT-TAAGTGAATTAGGCTGCAAGAAA 59871
Query 125781 ATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACC 125840
|| || || | |||||| ||||| || ||||| | ||| || ||| ||||| ||
Sbjct 59870 ATCTATGGTGCAACGAATCCGTTTGACTTTATGACGATCATTTCTACAGAAGGTAAAACA 59811
Query 125841 AACTTTTTCGAGAAGAAGGTCAGCGAGTACAA 125872
|||||||| || ||||| || |||| || ||
Sbjct 59810 AACTTTTTTGAAAAGAAAGTGGGCGAATATAA 59779
>seq173
Length=58411
Score = 122 bits (134), Expect = 1e-22
Identities = 180/254 (71%), Gaps = 6/254 (2%)
Strand=Plus/Minus
Query 70155 TTGATCAATTG---CAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGA 70211
||||||||||| ||| ||||| | || |||| || ||| |||||||||| || |
Sbjct 29454 TTGATCAATTGGCACAGGTAATCAATACCA---TCAAAACTAATTCAACAGATAGAAGAA 29398
Query 70212 TCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCACT 70271
| | ||||| ||||||||||| | ||| | | ||||||| ||||| || || || |
Sbjct 29397 TGATTATGTGTGCATGGAATCCTACGGATCTCCCTGAAATGGCTCTACCGCCTTGCCATT 29338
Query 70272 GTTTGGCTCAGTTTTACTCGTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTG 70331
|||| | |||||||| | | |||| |||| || || | |||||||| |
Sbjct 29337 GTTTAGTGCAGTTTTATGTGGCCAATGGTGAATTATCCTGTCAGTTATATCAGAGATCAG 29278
Query 70332 CCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGA 70391
| || ||||| || || || || ||||| ||||| |||||| || |||| || | ||||
Sbjct 29277 CTGATATGGGACTTGGAGTTCCTTTTAATATTGCTAGCTATGCTTTGTTAACTTATATGA 29218
Query 70392 TTGCTCACATTACC 70405
| ||||| |||||
Sbjct 29217 TAGCTCATGTTACC 29204
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740911951536960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |