Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2259 143 2e-29 seq1411 113 3e-20 seq4409 105 5e-18 >seq2259 Length=79244 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| | || || || |||||||| || ||||| || || || ||| Sbjct 78062 CCACCTCTCAATCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCGGAG 78121 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | || || | |||||| ||||| | ||||||||||||||||| || Sbjct 78122 AGGGTGCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGG 78181 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| |||||| ||||||| |||| ||||| ||| ||| || Sbjct 78182 ATACCTTCTTTGTCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCGACC 78241 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| ||||| || |||||||| || ||||||||||| Sbjct 78242 TCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288 >seq1411 Length=135556 Score = 113 bits (124), Expect = 3e-20 Identities = 151/206 (73%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 15173 TCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15232 ||||||||||||||||| || ||| | | ||||||| | ||||| |||||| | Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831 Query 15233 ATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAAT 15291 || | |||||||||||| || || ||||| ||||| ||| |||||| || || | Sbjct 105830 ATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCT-TTCACGTT 105772 Query 15292 TTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTAC 15351 ||| || || ||| | ||| || || || || ||||||||||| || || ||||| || Sbjct 105771 TTCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCAC 105712 Query 15352 AAAAATTTGCA-TATTTGAAAATAAA 15376 ||||| |||| | | | |||||||| Sbjct 105711 GAAAATCTGCATTCTATAAAAATAAA 105686 Score = 95.1 bits (104), Expect = 9e-15 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| ||||||||||||||||| || || |||||||| |||||||| || ||||| || Sbjct 108336 TGCCTCCTCTCAATCTTAAAACCAAGTGGAGGGTGGATTCTTTTTGAATATTGTAGTCTG 108277 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTG 15246 || | | | ||||| |||||||| |||||| | || ||||||||||| Sbjct 108276 AAAGGGTACGACCATCTTCCAATTGTTTTCCAGCGAAGATTAAACGTTGTTG 108225 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | |||||| || ||||| |||||||| || ||| | | | ||||| Sbjct 108796 ACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGTCCATCTTCA 108737 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| |||||| | ||||| | || || || ||||||||||||||||| | Sbjct 108736 AGTTGTTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGA 108677 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCG 15304 |||||| |||||| |||| || |||||| Sbjct 108676 ATTTTGGCTTTTACATTTTCAATAGTATCG 108647 >seq4409 Length=33873 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195 ||||||||||| || | || ||||| | ||| || || ||||| || || |||||| Sbjct 17984 GCCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGA 17925 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 | | | | ||||||| | ||||||||| ||| | ||||| | || ||||| || Sbjct 17924 CAAAGTCCGTCCGTCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGG 17865 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||| ||||| |||||| ||||||| |||| || || || ||| || Sbjct 17864 AATTCCTTCCTTGTCCTGAATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGAC 17805 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||| || || || | || ||||| ||||| ||||| Sbjct 17804 CTCAAGAGTGATGGTCTTGCCCGTTAAGGTCTTTACGAAAATCTGCAT 17757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362109034118136