Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq2259 111 1e-19 seq4409 96.9 2e-15 seq1411 84.2 1e-11 >seq2259 Length=79244 Score = 111 bits (122), Expect = 1e-19 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || | | ||||| |||| || ||||| ||||| ||||| || || || Sbjct 78061 ACCACCTCTCAATCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCGGA 78120 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | || | || |||| ||| || ||| ||| || |||||||| ||||| | ||| Sbjct 78121 GAGGGTGCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGG 78180 Query 33262 TATGCCTTCTTTTTCGCTAAT---CGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || |||||||| || ||| ||||| |||| ||| ||| |||||| |||| Sbjct 78181 GATACCTTCTTTGTCCTGAATTTTCGCCT---TTACATTTTCAATGGTGTCGGATGGTTC 78237 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || || || || |||||||| |||||||||||||| Sbjct 78238 GACCTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288 >seq4409 Length=33873 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | || | ||||||||| || || || || ||||| ||||| ||||| ||| Sbjct 17983 CCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGAC 17924 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 ||| | || ||| |||| ||| || || || || || | |||||||| | || Sbjct 17923 AAAGTCCGTCCGTCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGGA 17864 Query 33263 ATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 || ||||| || || ||| |||| |||| ||| ||| ||||| |||| Sbjct 17863 ATTCCTTCCTTGTCCTGAATTTTTGCCT---TTACATTTTCAATAGTGTCCGACGGTTCG 17807 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || || || ||||| | || ||||||||||| ||||| Sbjct 17806 ACCTCAAGAGTGATGGTCTTGCCCGTTAAGGTCTTTACGAAAATCTGCAT 17757 >seq1411 Length=135556 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 33179 TCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAAT 33238 ||||||||||| ||||| || || | || | ||| || | || || ||| || Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831 Query 33239 ATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTT 33298 || | |||||| ||||| | ||| || ||||| || || |||| ||| || || Sbjct 105830 ATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACGTTT 105771 Query 33299 TGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACG 33358 | || |||||| |||| ||| |||| || || ||||| || ||||| ||||| ||| Sbjct 105770 TCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCACG 105711 Query 33359 AAAATTTGCAT 33369 ||||| ||||| Sbjct 105710 AAAATCTGCAT 105700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318715842418608