Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq2259 111 1e-19
seq4409 96.9 2e-15
seq1411 84.2 1e-11
>seq2259
Length=79244
Score = 111 bits (122), Expect = 1e-19
Identities = 164/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
||| ||||| || | | ||||| |||| || ||||| ||||| ||||| || || ||
Sbjct 78061 ACCACCTCTCAATCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCGGA 78120
Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
| || | || |||| ||| || ||| ||| || |||||||| ||||| | |||
Sbjct 78121 GAGGGTGCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGG 78180
Query 33262 TATGCCTTCTTTTTCGCTAAT---CGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318
|| |||||||| || ||| ||||| |||| ||| ||| |||||| ||||
Sbjct 78181 GATACCTTCTTTGTCCTGAATTTTCGCCT---TTACATTTTCAATGGTGTCGGATGGTTC 78237
Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || || || || || || || || |||||||| ||||||||||||||
Sbjct 78238 GACCTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288
>seq4409
Length=33873
Score = 96.9 bits (106), Expect = 2e-15
Identities = 160/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202
|| ||||| | || | ||||||||| || || || || ||||| ||||| ||||| |||
Sbjct 17983 CCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGAC 17924
Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262
||| | || ||| |||| ||| || || || || || | |||||||| | ||
Sbjct 17923 AAAGTCCGTCCGTCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGGA 17864
Query 33263 ATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319
|| ||||| || || ||| |||| |||| ||| ||| ||||| ||||
Sbjct 17863 ATTCCTTCCTTGTCCTGAATTTTTGCCT---TTACATTTTCAATAGTGTCCGACGGTTCG 17807
Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || ||||| || || || ||||| | || ||||||||||| |||||
Sbjct 17806 ACCTCAAGAGTGATGGTCTTGCCCGTTAAGGTCTTTACGAAAATCTGCAT 17757
>seq1411
Length=135556
Score = 84.2 bits (92), Expect = 1e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 33179 TCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAAT 33238
||||||||||| ||||| || || | || | ||| || | || || ||| ||
Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831
Query 33239 ATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTT 33298
|| | |||||| ||||| | ||| || ||||| || || |||| ||| || ||
Sbjct 105830 ATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACGTTT 105771
Query 33299 TGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACG 33358
| || |||||| |||| ||| |||| || || ||||| || ||||| ||||| |||
Sbjct 105770 TCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCACG 105711
Query 33359 AAAATTTGCAT 33369
||||| |||||
Sbjct 105710 AAAATCTGCAT 105700
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318715842418608
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |