Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq2028 304 1e-77
>seq2028
Length=154558
Score = 304 bits (336), Expect = 1e-77
Identities = 518/743 (70%), Gaps = 10/743 (1%)
Strand=Plus/Plus
Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918
||| | |||||||| ||| | |||||||||||||||||||| |||||| ||||| |
Sbjct 59775 TTTCTTATATTCGCCCACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTGTAGAAATGAT 59834
Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978
|||||| || || ||||| | | || |||| ||| || || |||||||| |||
Sbjct 59835 CGTCATAAAGTCAAACGGATTCGTTGCACCATAGATTTTCTTGCAGCCTAATTCACTTAA 59894
Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038
||| | ||||| ||||| ||||| ||||| ||| || | || |||||||| || |
Sbjct 59895 CAAACGATCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCATTCCAATCAG 59954
Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098
| || |||| ||| || | || || | || |||||| |||||| || || ||
Sbjct 59955 ACTGACTGGCAAAGCCTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCTGCAATAAT 60014
Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATT-TGAT--AGATGCTTAAACATCATACATGC 13155
|| |||| | ||| || || || |||| ||||| || | | |||||
Sbjct 60015 A---CTGGTTACTCTTTCTTGTGATGGTTTCTGATGCAGATGTGAGAATAGTAAGCATGC 60071
Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGG 13215
||||||||| || | ||||||||||| ||| | || ||||||||||||| ||| ||
Sbjct 60072 AAAATCACAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTAAACCGGG 60131
Query 13216 CATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCC 13275
|||||| || ||||| || | ||| || || || ||||| ||| ||||| || ||
Sbjct 60132 CATAAGACCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAAAAAAATGCC 60191
Query 13276 TTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCT-ATCC 13334
|||||| || ||||| || | ||| ||||| || ||| | || ||| | || ||||
Sbjct 60192 TTCAACGGCAGCAAAAGCCACCAATCTTTCGCCGAACG-AGGATGTTTTCGAGCTAATCC 60250
Query 13335 ACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATA 13394
||||| |||||| | ||||| | ||||| || ||| |||| || |||||||| |
Sbjct 60251 ACTTTAGGGCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGCGTTAAACA 60310
Query 13395 AATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTG 13454
| | | |||||| || || ||||| || || || | | ||| |||||||| |
Sbjct 60311 AGAACTCTTTTTCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGTACATTTCAG 60370
Query 13455 AATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAA 13514
|||| |||||||| || || || ||||| ||||||||||| | ||| || | || ||||
Sbjct 60371 AATGGATATTTTCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAGTCACTTGAA 60430
Query 13515 CTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaa 13573
|||| || | ||| | ||| | | || || || || || || || |||||||||
Sbjct 60431 CTTCTTGACTGAAA-CGTTCCACAAGATTCTCATTTACAATACCATCTGAGGCAGCAAAA 60489
Query 13574 aaaGCAAGTATGTGCTTAATAAA 13596
||||| | | |||| ||| ||
Sbjct 60490 AAAGCTAACACGTGCGAAATGAA 60512
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430898904702192
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |