Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2028 304 1e-77 >seq2028 Length=154558 Score = 304 bits (336), Expect = 1e-77 Identities = 518/743 (70%), Gaps = 10/743 (1%) Strand=Plus/Plus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 ||| | |||||||| ||| | |||||||||||||||||||| |||||| ||||| | Sbjct 59775 TTTCTTATATTCGCCCACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTGTAGAAATGAT 59834 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978 |||||| || || ||||| | | || |||| ||| || || |||||||| ||| Sbjct 59835 CGTCATAAAGTCAAACGGATTCGTTGCACCATAGATTTTCTTGCAGCCTAATTCACTTAA 59894 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 ||| | ||||| ||||| ||||| ||||| ||| || | || |||||||| || | Sbjct 59895 CAAACGATCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCATTCCAATCAG 59954 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 | || |||| ||| || | || || | || |||||| |||||| || || || Sbjct 59955 ACTGACTGGCAAAGCCTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCTGCAATAAT 60014 Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATT-TGAT--AGATGCTTAAACATCATACATGC 13155 || |||| | ||| || || || |||| ||||| || | | ||||| Sbjct 60015 A---CTGGTTACTCTTTCTTGTGATGGTTTCTGATGCAGATGTGAGAATAGTAAGCATGC 60071 Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGG 13215 ||||||||| || | ||||||||||| ||| | || ||||||||||||| ||| || Sbjct 60072 AAAATCACAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTAAACCGGG 60131 Query 13216 CATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCC 13275 |||||| || ||||| || | ||| || || || ||||| ||| ||||| || || Sbjct 60132 CATAAGACCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAAAAAAATGCC 60191 Query 13276 TTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCT-ATCC 13334 |||||| || ||||| || | ||| ||||| || ||| | || ||| | || |||| Sbjct 60192 TTCAACGGCAGCAAAAGCCACCAATCTTTCGCCGAACG-AGGATGTTTTCGAGCTAATCC 60250 Query 13335 ACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATA 13394 ||||| |||||| | ||||| | ||||| || ||| |||| || |||||||| | Sbjct 60251 ACTTTAGGGCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGCGTTAAACA 60310 Query 13395 AATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTG 13454 | | | |||||| || || ||||| || || || | | ||| |||||||| | Sbjct 60311 AGAACTCTTTTTCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGTACATTTCAG 60370 Query 13455 AATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAA 13514 |||| |||||||| || || || ||||| ||||||||||| | ||| || | || |||| Sbjct 60371 AATGGATATTTTCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAGTCACTTGAA 60430 Query 13515 CTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaa 13573 |||| || | ||| | ||| | | || || || || || || || ||||||||| Sbjct 60431 CTTCTTGACTGAAA-CGTTCCACAAGATTCTCATTTACAATACCATCTGAGGCAGCAAAA 60489 Query 13574 aaaGCAAGTATGTGCTTAATAAA 13596 ||||| | | |||| ||| || Sbjct 60490 AAAGCTAACACGTGCGAAATGAA 60512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430898904702192