Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2028 230 5e-55 seq4409 165 2e-35 seq2259 154 3e-32 seq1411 149 1e-30 >seq2028 Length=154558 Score = 230 bits (254), Expect = 5e-55 Identities = 582/871 (67%), Gaps = 28/871 (3%) Strand=Plus/Minus Query 268730 GATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGAT 268789 ||||| ||| || ||||| | || | ||||| ||||||||| || ||||| || Sbjct 60623 GATATTTGGCAGAAATACAAGGAAGCTGAAGCTTCCTTTTGGACTACCGAGGAAGTGGAC 60564 Query 268790 CTGTCTTATGACTTAATAGATTGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCT 268849 || | |||| || | | ||| | || | ||| | |||||| || || || || Sbjct 60563 CTCACCCATGATCTACGACACTGGGAGAAACTGAAATCTGAAGAACGACATTTCATTTCG 60504 Query 268850 TATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAG 268909 | | | || |||||||| | |||||||| || || || ||||| || || Sbjct 60503 CACGTGTTAGCTTTTTTTGCTGCCTCAGATGGTATTGTAAATGAGAATCTTGTGGAACGT 60444 Query 268910 TTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATA 268969 ||| ||||||| || || | ||||||| | |||||||| ||||||||||| || || Sbjct 60443 TTCAGTCAAGAAGTTCAAGTGACTGAAGCTCGTTGTTTTTATGGATTCCAGATTGCAATT 60384 Query 268970 GAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAAC 269029 |||||||| ||||| || |||||||| | | || || || ||||| ||| ||| Sbjct 60383 GAAAATATCCATTCTGAAATGTACAGCAAACTTATTGAAACGTATATCAGCGATCCCAAT 60324 Query 269030 GAAAAGAAAAGACTATTTTCTT----CTATGAGAACTATGGACTGTGTGAGaaaaaaaTC 269085 || |||||| | || || |||| ||| ||| ||||| | || ||| | Sbjct 60323 GA----AAAAGAGTTCTTGTTTAACGCTATTGAAACCATGCCGTGTGTTAAGAAGAAAGC 60268 Query 269086 TGAATGGGCTCTGAAATGGATAA--ACGATAGC-GCGCCTTACGGAGAAAGGTTAGTTGC 269142 ||| ||||| || || ||||| | ||| | | | | | ||| ||||| || || || Sbjct 60267 TGATTGGGCCCTAAAGTGGATTAGCTCGAAAACATCCTCGTTCGGCGAAAGATTGGTGGC 60208 Query 269143 TTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGT-CTTTTGCCGCTATCTTTTGGTTGA 269201 |||||| || || ||||| || || ||| | ||| ||||| || || || ||||| | Sbjct 60207 TTTTGCTGCCGTTGAAGGCAT-TTTTTTCAGTGGTAGCTTTGCAGCGATTTTCTGGTTAA 60149 Query 269202 AGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAG 269261 ||||| | || |||||||| || ||||| || || || ||||||||| ||| || |||| Sbjct 60148 AGAAACGTGGTCTTATGCCCGGTTTAACATTTTCAAATGAATTGATATCCAGAGATGAAG 60089 Query 269262 GTTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACCTTCTC 269321 || |||| || || || || || ||| |||| || | |||| || ||||| || | Sbjct 60088 GTCTACATTGTGATTTTGCATGCTTACTATT--CTCA-CATCTGCATCAGAAACCATCAC 60032 Query 269322 AAGATAGAGTATACGAAATTAT---AGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAA 269378 |||| |||||| | ||||| |||| || ||| | ||||| ||| || | Sbjct 60031 AAGAAAGAGTAACCAGTATTATTGCAGAT---GCAGTTACAATAGAACAAGAGTTCTTGT 59975 Query 269379 CGGAAGCTCTATCTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATATTA 269438 | || ||| | | || ||| || || |||||| |||||| |||| | ||||| Sbjct 59974 CTGAGGCTTTGCCAGTCAGTCTGATTGGAATGAATTGCAAATTGATGTGTCAGTATATAG 59915 Query 269439 AGTTCGTATCTGATAGATTGCT-GGTGTCTTTAGGGTTTAGTAAAAAATATAACGTTGAA 269497 | || ||| ||||| | ||| | ||| ||||| | | | ||||| || || || Sbjct 59914 AATTTGTAGCTGATCGTTTGTTAAGTG-AATTAGGCTGCA--AGAAAATCTATGGTGCAA 59858 Query 269498 --AATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGA 269555 ||||||||| |||||| || || || ||||||||| | || || || || | Sbjct 59857 CGAATCCGTTTGACTTTATGACGATCATTTCTACAGAAGGTAAAACAAACTTTTTTGAAA 59798 Query 269556 AGCGGGTAAGTAACTATCAGAAAATGGGTGT 269586 || || | | ||| ||||| | ||||| Sbjct 59797 AGAAAGTGGGCGAATATAAGAAAGTTGGTGT 59767 >seq4409 Length=33873 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || | ||| || | |||||| |||||||| || ||||||||||| || || Sbjct 17983 CCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGAC 17924 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||| | |||||||| |||||||| || || || || | ||||| || || || || Sbjct 17923 AAAGTCCGTCCGTCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGGA 17864 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 |||||||| || |||||||| ||||| ||||||||||| | || || ||||| ||| Sbjct 17863 ATTCCTTCCTTGTCCTGAATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGACC 17804 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || ||||| || || | || ||||| || ||||||||| || Sbjct 17803 TCAAGAGTGATGGTCTTGCCCGTTAAGGTCTTTACGAAAATCTGCATTGTG 17753 >seq2259 Length=79244 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || ||||| | || | || || || || || ||||||||||| Sbjct 78059 ATACCACCTCTCAATCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCG 78118 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| || || |||||||| |||||||| || | | ||||| || || Sbjct 78119 GAGAGGGTGCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGG 78178 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| |||||||| || || ||||||||||| | ||| ||| ||||| Sbjct 78179 GGGATACCTTCTTTGTCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCG 78238 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||||||||| || ||||| || || || ||||| Sbjct 78239 ACCTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288 >seq1411 Length=135556 Score = 149 bits (164), Expect = 1e-30 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 ||||| || || || ||||| ||||| || | |||||||| || ||||| ||||| || Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||||| || || || || ||||| || ||||||||||||||||| || ||| Sbjct 105830 ATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACGTTT 105771 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || ||| |||||| || || | ||| || || ||||||||||| ||||| || Sbjct 105770 TCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCACG 105711 Query 104549 AATATCTGCATT 104560 || ||||||||| Sbjct 105710 AAAATCTGCATT 105699 Score = 136 bits (150), Expect = 9e-27 Identities = 122/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | |||||| || || || || || || || |||||||| ||||| | || ||| Sbjct 108799 AGCACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGTCCATCT 108740 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || |||||||||||||| || || | |||||| ||||| ||||| ||||||||||| || Sbjct 108739 TCAAGTTGTTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTTGTCT 108680 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCG 104500 ||||| || |||||||||||||| | |||||| Sbjct 108679 TGAATTTTGGCTTTTACATTTTCAATAGTATCG 108647 Score = 122 bits (134), Expect = 2e-22 Identities = 106/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 ||||| |||||||| | || || || || ||||| || ||||| |||||||||||||| Sbjct 106472 TTTCCGGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTATCCTGAATCTTG 106413 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 |||||||||||||| | || ||| |||||| || ||||| ||||| ||||| ||||| Sbjct 106412 GCTTTTACATTTTCAATAGTGTCGGAAGGTTCCACTTCTAGAGTAATGGTCTTGCCAGTT 106353 Query 104537 AGTGTTTTTACA 104548 || ||||| ||| Sbjct 106352 AGGGTTTTCACA 106341 Score = 96.9 bits (106), Expect = 8e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 104447 GGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT 104506 || || ||||||||||| || ||||| || |||||||| ||||| | ||| || ||| Sbjct 108003 GGGGGAATTCCTTCTTTGTCTTGAATTTTAGCTTTTACGTTTTCAATGGTGTCTGAGGGT 107944 Query 104507 TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATC 104554 ||||| |||| |||||| ||||| ||||| || |||||||| || ||| Sbjct 107943 TCTACTTCTAATGTAATTGTCTTGCCAGTCAGGGTTTTTACGAAAATC 107896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151163897566368