Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq2028 230 5e-55
seq4409 165 2e-35
seq2259 154 3e-32
seq1411 149 1e-30
>seq2028
Length=154558
Score = 230 bits (254), Expect = 5e-55
Identities = 582/871 (67%), Gaps = 28/871 (3%)
Strand=Plus/Minus
Query 268730 GATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGAT 268789
||||| ||| || ||||| | || | ||||| ||||||||| || ||||| ||
Sbjct 60623 GATATTTGGCAGAAATACAAGGAAGCTGAAGCTTCCTTTTGGACTACCGAGGAAGTGGAC 60564
Query 268790 CTGTCTTATGACTTAATAGATTGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCT 268849
|| | |||| || | | ||| | || | ||| | |||||| || || || ||
Sbjct 60563 CTCACCCATGATCTACGACACTGGGAGAAACTGAAATCTGAAGAACGACATTTCATTTCG 60504
Query 268850 TATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAG 268909
| | | || |||||||| | |||||||| || || || ||||| || ||
Sbjct 60503 CACGTGTTAGCTTTTTTTGCTGCCTCAGATGGTATTGTAAATGAGAATCTTGTGGAACGT 60444
Query 268910 TTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATA 268969
||| ||||||| || || | ||||||| | |||||||| ||||||||||| || ||
Sbjct 60443 TTCAGTCAAGAAGTTCAAGTGACTGAAGCTCGTTGTTTTTATGGATTCCAGATTGCAATT 60384
Query 268970 GAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAAC 269029
|||||||| ||||| || |||||||| | | || || || ||||| ||| |||
Sbjct 60383 GAAAATATCCATTCTGAAATGTACAGCAAACTTATTGAAACGTATATCAGCGATCCCAAT 60324
Query 269030 GAAAAGAAAAGACTATTTTCTT----CTATGAGAACTATGGACTGTGTGAGaaaaaaaTC 269085
|| |||||| | || || |||| ||| ||| ||||| | || ||| |
Sbjct 60323 GA----AAAAGAGTTCTTGTTTAACGCTATTGAAACCATGCCGTGTGTTAAGAAGAAAGC 60268
Query 269086 TGAATGGGCTCTGAAATGGATAA--ACGATAGC-GCGCCTTACGGAGAAAGGTTAGTTGC 269142
||| ||||| || || ||||| | ||| | | | | | ||| ||||| || || ||
Sbjct 60267 TGATTGGGCCCTAAAGTGGATTAGCTCGAAAACATCCTCGTTCGGCGAAAGATTGGTGGC 60208
Query 269143 TTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGT-CTTTTGCCGCTATCTTTTGGTTGA 269201
|||||| || || ||||| || || ||| | ||| ||||| || || || ||||| |
Sbjct 60207 TTTTGCTGCCGTTGAAGGCAT-TTTTTTCAGTGGTAGCTTTGCAGCGATTTTCTGGTTAA 60149
Query 269202 AGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAG 269261
||||| | || |||||||| || ||||| || || || ||||||||| ||| || ||||
Sbjct 60148 AGAAACGTGGTCTTATGCCCGGTTTAACATTTTCAAATGAATTGATATCCAGAGATGAAG 60089
Query 269262 GTTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACCTTCTC 269321
|| |||| || || || || || ||| |||| || | |||| || ||||| || |
Sbjct 60088 GTCTACATTGTGATTTTGCATGCTTACTATT--CTCA-CATCTGCATCAGAAACCATCAC 60032
Query 269322 AAGATAGAGTATACGAAATTAT---AGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAA 269378
|||| |||||| | ||||| |||| || ||| | ||||| ||| || |
Sbjct 60031 AAGAAAGAGTAACCAGTATTATTGCAGAT---GCAGTTACAATAGAACAAGAGTTCTTGT 59975
Query 269379 CGGAAGCTCTATCTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATATTA 269438
| || ||| | | || ||| || || |||||| |||||| |||| | |||||
Sbjct 59974 CTGAGGCTTTGCCAGTCAGTCTGATTGGAATGAATTGCAAATTGATGTGTCAGTATATAG 59915
Query 269439 AGTTCGTATCTGATAGATTGCT-GGTGTCTTTAGGGTTTAGTAAAAAATATAACGTTGAA 269497
| || ||| ||||| | ||| | ||| ||||| | | | ||||| || || ||
Sbjct 59914 AATTTGTAGCTGATCGTTTGTTAAGTG-AATTAGGCTGCA--AGAAAATCTATGGTGCAA 59858
Query 269498 --AATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGA 269555
||||||||| |||||| || || || ||||||||| | || || || || |
Sbjct 59857 CGAATCCGTTTGACTTTATGACGATCATTTCTACAGAAGGTAAAACAAACTTTTTTGAAA 59798
Query 269556 AGCGGGTAAGTAACTATCAGAAAATGGGTGT 269586
|| || | | ||| ||||| | |||||
Sbjct 59797 AGAAAGTGGGCGAATATAAGAAAGTTGGTGT 59767
>seq4409
Length=33873
Score = 165 bits (182), Expect = 2e-35
Identities = 175/231 (76%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| ||||| || | ||| || | |||||| |||||||| || ||||||||||| || ||
Sbjct 17983 CCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGAC 17924
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
| ||| | |||||||| |||||||| || || || || | ||||| || || || ||
Sbjct 17923 AAAGTCCGTCCGTCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGGA 17864
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
|||||||| || |||||||| ||||| ||||||||||| | || || ||||| |||
Sbjct 17863 ATTCCTTCCTTGTCCTGAATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGACC 17804
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| || || || ||||| || || | || ||||| || ||||||||| ||
Sbjct 17803 TCAAGAGTGATGGTCTTGCCCGTTAAGGTCTTTACGAAAATCTGCATTGTG 17753
>seq2259
Length=79244
Score = 154 bits (170), Expect = 3e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| | || ||||| | || | || || || || || |||||||||||
Sbjct 78059 ATACCACCTCTCAATCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCG 78118
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | ||| || || |||||||| |||||||| || | | ||||| || ||
Sbjct 78119 GAGAGGGTGCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGG 78178
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || |||||||| |||||||| || || ||||||||||| | ||| ||| |||||
Sbjct 78179 GGGATACCTTCTTTGTCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCG 78238
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || || || ||||||||||| || ||||| || || || |||||
Sbjct 78239 ACCTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288
>seq1411
Length=135556
Score = 149 bits (164), Expect = 1e-30
Identities = 148/192 (77%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428
||||| || || || ||||| ||||| || | |||||||| || ||||| ||||| ||
Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831
Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488
|| || | ||||| || || || || ||||| || ||||||||||||||||| || |||
Sbjct 105830 ATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACGTTT 105771
Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548
|| | || ||| |||||| || || | ||| || || ||||||||||| ||||| ||
Sbjct 105770 TCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCACG 105711
Query 104549 AATATCTGCATT 104560
|| |||||||||
Sbjct 105710 AAAATCTGCATT 105699
Score = 136 bits (150), Expect = 9e-27
Identities = 122/153 (80%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || | |||||| || || || || || || || |||||||| ||||| | || |||
Sbjct 108799 AGCACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGTCCATCT 108740
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| |||||||||||||| || || | |||||| ||||| ||||| ||||||||||| ||
Sbjct 108739 TCAAGTTGTTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTTGTCT 108680
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCG 104500
||||| || |||||||||||||| | ||||||
Sbjct 108679 TGAATTTTGGCTTTTACATTTTCAATAGTATCG 108647
Score = 122 bits (134), Expect = 2e-22
Identities = 106/132 (80%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
||||| |||||||| | || || || || ||||| || ||||| ||||||||||||||
Sbjct 106472 TTTCCGGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTATCCTGAATCTTG 106413
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
|||||||||||||| | || ||| |||||| || ||||| ||||| ||||| |||||
Sbjct 106412 GCTTTTACATTTTCAATAGTGTCGGAAGGTTCCACTTCTAGAGTAATGGTCTTGCCAGTT 106353
Query 104537 AGTGTTTTTACA 104548
|| ||||| |||
Sbjct 106352 AGGGTTTTCACA 106341
Score = 96.9 bits (106), Expect = 8e-15
Identities = 86/108 (80%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 104447 GGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT 104506
|| || ||||||||||| || ||||| || |||||||| ||||| | ||| || |||
Sbjct 108003 GGGGGAATTCCTTCTTTGTCTTGAATTTTAGCTTTTACGTTTTCAATGGTGTCTGAGGGT 107944
Query 104507 TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATC 104554
||||| |||| |||||| ||||| ||||| || |||||||| || |||
Sbjct 107943 TCTACTTCTAATGTAATTGTCTTGCCAGTCAGGGTTTTTACGAAAATC 107896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151163897566368
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |