Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq4409 147 2e-30
seq2259 141 8e-29
seq1411 100 3e-16
>seq4409
Length=33873
Score = 147 bits (162), Expect = 2e-30
Identities = 171/229 (75%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||||| ||| | |||||| || || |||||||||||||| | ||||||||| |
Sbjct 17983 CCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGAC 17924
Query 94841 ATAGT--GTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898
| ||| || | || ||||| ||||| ||| | ||||| ||||| ||||| ||||| |
Sbjct 17923 AAAGTCCGTCCG--TCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCG 17866
Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958
|||| ||||| ||||| | |||||||||||| || | | |||||| | | ||||
Sbjct 17865 GAATTCCTTCCTTGTCCTGAATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGA 17806
Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| |||| |||||||| || || || | || || || || ||||||||
Sbjct 17805 CCTCAAGAGTGATGGTCTTGCCCGTTAAGGTCTTTACGAAAATCTGCAT 17757
>seq2259
Length=79244
Score = 141 bits (156), Expect = 8e-29
Identities = 170/229 (74%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| |||||||||| | |||||||||| || || |||||||| | ||||| |||
Sbjct 78062 CCACCTCTCAATCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCGG-- 78119
Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898
| || || || ||||||||| ||||| || ||||||| || | ||| || ||||| |
Sbjct 78120 AGAGGGTGCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGG 78179
Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958
| |||||||||||||| | |||||| ||||| || | | ||||| | | ||||
Sbjct 78180 GGATACCTTCTTTGTCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCGA 78239
Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| |||| |||||||| || ||||| ||||||||||| || || |||||
Sbjct 78240 CCTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288
>seq1411
Length=135556
Score = 100 bits (110), Expect = 3e-16
Identities = 117/158 (74%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
|| || |||||||| || | ||||| | | ||| || ||||| || || ||||| |||
Sbjct 105854 TCTTCAAGCTGTTTACCAGCGAAGATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTG 105795
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | ||| ||||| || ||| ||| |||||| | | || || || | ||||||
Sbjct 105794 TCCTGAATCTTTGCTTTCACGTTTTCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATG 105735
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010
||||| |||||||| |||||||| || |||||||| ||
Sbjct 105734 GTTTTACCAGTAAGGGTTTTCACGAAAATCTGCATTCT 105697
Score = 86.0 bits (94), Expect = 6e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924
|||||| |||| || ||||||||||| ||||||||||||||||| || || | ||| ||
Sbjct 106472 TTTCCGGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTATCCTGAATCTTG 106413
Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984
|| || || | | |||||| | | || || || | || ||||| || |||||
Sbjct 106412 GCTTTTACATTTTCAATAGTGTCGGAAGGTTCCACTTCTAGAGTAATGGTCTTGCCAGTT 106353
Query 94985 AGAGTTTTCACA 94996
|| |||||||||
Sbjct 106352 AGGGTTTTCACA 106341
Score = 86.0 bits (94), Expect = 6e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
|||||| || || || || |||||||| | ||| || || | ||| ||| ||
Sbjct 108797 CACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGTCCATCTTC 108738
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|| |||||||| | ||||| || || ||||||||||||||||| ||||||||||| |
Sbjct 108737 AAGTTGTTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTTGTCTTG 108678
Query 94918 AATTTTTGCCTTGAC 94932
|||||| || || ||
Sbjct 108677 AATTTTGGCTTTTAC 108663
Score = 84.2 bits (92), Expect = 2e-11
Identities = 105/142 (74%), Gaps = 4/142 (3%)
Strand=Plus/Minus
Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832
||| || ||| ||||| |||| || ||||||||||| || || ||||| || | ||| |
Sbjct 108596 TTTGCATTCCGCCTCTTAATCTCAGAACCAAGTGCAATGTTGACTCCTTCTGAATGTTGT 108537
Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890
| || | || || | ||| || | ||||||||| |||| || ||||| || ||
Sbjct 108536 AGTCAG--AAAGGGTACGTCCATCTTCTAATTGTTTTCCGGCAAAAATCAATCTCTGTTG 108479
Query 94891 ATCTGGAGGAATACCTTCTTTG 94912
||||||||||||||||| |||
Sbjct 108478 GTCTGGAGGAATACCTTCCTTG 108457
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448202124538560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |