Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq4409 147 2e-30 seq2259 141 8e-29 seq1411 100 3e-16 >seq4409 Length=33873 Score = 147 bits (162), Expect = 2e-30 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| ||| | |||||| || || |||||||||||||| | ||||||||| | Sbjct 17983 CCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGAC 17924 Query 94841 ATAGT--GTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | ||| || | || ||||| ||||| ||| | ||||| ||||| ||||| ||||| | Sbjct 17923 AAAGTCCGTCCG--TCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCG 17866 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| ||||| ||||| | |||||||||||| || | | |||||| | | |||| Sbjct 17865 GAATTCCTTCCTTGTCCTGAATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGA 17806 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| |||||||| || || || | || || || || |||||||| Sbjct 17805 CCTCAAGAGTGATGGTCTTGCCCGTTAAGGTCTTTACGAAAATCTGCAT 17757 >seq2259 Length=79244 Score = 141 bits (156), Expect = 8e-29 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||||| | |||||||||| || || |||||||| | ||||| ||| Sbjct 78062 CCACCTCTCAATCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCGG-- 78119 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || || || ||||||||| ||||| || ||||||| || | ||| || ||||| | Sbjct 78120 AGAGGGTGCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGG 78179 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | |||||||||||||| | |||||| ||||| || | | ||||| | | |||| Sbjct 78180 GGATACCTTCTTTGTCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCGA 78239 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| |||||||| || ||||| ||||||||||| || || ||||| Sbjct 78240 CCTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288 >seq1411 Length=135556 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || |||||||| || | ||||| | | ||| || ||||| || || ||||| ||| Sbjct 105854 TCTTCAAGCTGTTTACCAGCGAAGATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTG 105795 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| ||||| || ||| ||| |||||| | | || || || | |||||| Sbjct 105794 TCCTGAATCTTTGCTTTCACGTTTTCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATG 105735 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 ||||| |||||||| |||||||| || |||||||| || Sbjct 105734 GTTTTACCAGTAAGGGTTTTCACGAAAATCTGCATTCT 105697 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 |||||| |||| || ||||||||||| ||||||||||||||||| || || | ||| || Sbjct 106472 TTTCCGGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTATCCTGAATCTTG 106413 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 || || || | | |||||| | | || || || | || ||||| || ||||| Sbjct 106412 GCTTTTACATTTTCAATAGTGTCGGAAGGTTCCACTTCTAGAGTAATGGTCTTGCCAGTT 106353 Query 94985 AGAGTTTTCACA 94996 || ||||||||| Sbjct 106352 AGGGTTTTCACA 106341 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||| || || || || |||||||| | ||| || || | ||| ||| || Sbjct 108797 CACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGTCCATCTTC 108738 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || |||||||| | ||||| || || ||||||||||||||||| ||||||||||| | Sbjct 108737 AAGTTGTTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTTGTCTTG 108678 Query 94918 AATTTTTGCCTTGAC 94932 |||||| || || || Sbjct 108677 AATTTTGGCTTTTAC 108663 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/142 (74%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||| ||||| |||| || ||||||||||| || || ||||| || | ||| | Sbjct 108596 TTTGCATTCCGCCTCTTAATCTCAGAACCAAGTGCAATGTTGACTCCTTCTGAATGTTGT 108537 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | || | || || | ||| || | ||||||||| |||| || ||||| || || Sbjct 108536 AGTCAG--AAAGGGTACGTCCATCTTCTAATTGTTTTCCGGCAAAAATCAATCTCTGTTG 108479 Query 94891 ATCTGGAGGAATACCTTCTTTG 94912 ||||||||||||||||| ||| Sbjct 108478 GTCTGGAGGAATACCTTCCTTG 108457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448202124538560