Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_006645.1 Length=21388 Score E Sequences producing significant alignments: (Bits) Value seq2686 131 2e-26 >seq2686 Length=4073 Score = 131 bits (144), Expect = 2e-26 Identities = 213/306 (70%), Gaps = 10/306 (3%) Strand=Plus/Plus Query 6068 TTGCTAAATTTAAGTGATGATTGATCTATAATACCAATTTTATTGATTATAGTATAACTA 6127 ||||| ||||| ||||| |||||||| |||||||| | |||| |||||| | | || Sbjct 2042 TTGCTGCATTTATGTGATTATTGATCTCAAATACCAAATATATTACCTATAGTTTGATTA 2101 Query 6128 TTTTCAGTATGCTTAACCCGCAGGCCTTATTACCCTACCGTAGTAAAATAAGACCTATTC 6187 ||| ||||| | || || | |||||||||||||||| |||||||||||| |||| | Sbjct 2102 TTTA-AGTATATTAAAGCCATAAGCCTTATTACCCTACCATAGTAAAATAAGGCCTACTG 2160 Query 6188 GTAAGGTTTTTGAAAAAA--TTTAATTTTGTGTTTGTTTATGGTGAAAATTACCATTACT 6245 | ||||||||||| ||| |||||| ||| || ||||| | Sbjct 2161 GNNNNNNNNNNNNNNNNNNGTTTAATTTTGTTTTTATTTATGACAAAAGTTCCCATTT-T 2219 Query 6246 CCATTATAGTTT-ATGGCTAGTGTATTGATATAAAAATTAATGATACATTTCAATGATTG 6304 || | | |||| || | |||| | | |||| |||| | || | | | |||| Sbjct 2220 CCGTGAATGTTTTATAAAAACTGTACTTAAATAATGATTATTATTAAAACCTATTAATTG 2279 Query 6305 AATGTAATATTTTCGATTTTATTCAAAATCTCCCTTAGCTAGGCCTTATTACCCGCCAGT 6364 || |||||| |||||||| |||| |||||||||||||||||||||||||| || Sbjct 2280 GATA----ATTTTC-ATTTTATTACAAATTTCCCTTAGCTAGGCCTTATTACCCGCAGGT 2334 Query 6365 ACCTTA 6370 | |||| Sbjct 2335 ATCTTA 2340 Score = 80.6 bits (88), Expect = 4e-11 Identities = 73/91 (80%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 5745 TTAAGAAGTTATTTATAAGGTACCCGAGGGTAACAAGGCCTGTCGGGTAATAAGGCCTAA 5804 ||||||| ||| || ||||||| | |||||| ||| |||||| ||||||||||||| Sbjct 1263 TTAAGAAAATATGTA--AGGTACCTGCGGGTAATTAGGTCTGTCGACTAATAAGGCCTAA 1320 Query 5805 GTGATAGAAATGATATTTAAAATAACCGCTT 5835 |||| | |||| |||||| ||||| ||||| Sbjct 1321 GTGACAAAAATCGTATTTATAATAATCGCTT 1351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 68310642366648