Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_006645.1
Length=21388
Score E
Sequences producing significant alignments: (Bits) Value
seq2686 131 2e-26
>seq2686
Length=4073
Score = 131 bits (144), Expect = 2e-26
Identities = 213/306 (70%), Gaps = 10/306 (3%)
Strand=Plus/Plus
Query 6068 TTGCTAAATTTAAGTGATGATTGATCTATAATACCAATTTTATTGATTATAGTATAACTA 6127
||||| ||||| ||||| |||||||| |||||||| | |||| |||||| | | ||
Sbjct 2042 TTGCTGCATTTATGTGATTATTGATCTCAAATACCAAATATATTACCTATAGTTTGATTA 2101
Query 6128 TTTTCAGTATGCTTAACCCGCAGGCCTTATTACCCTACCGTAGTAAAATAAGACCTATTC 6187
||| ||||| | || || | |||||||||||||||| |||||||||||| |||| |
Sbjct 2102 TTTA-AGTATATTAAAGCCATAAGCCTTATTACCCTACCATAGTAAAATAAGGCCTACTG 2160
Query 6188 GTAAGGTTTTTGAAAAAA--TTTAATTTTGTGTTTGTTTATGGTGAAAATTACCATTACT 6245
| ||||||||||| ||| |||||| ||| || ||||| |
Sbjct 2161 GNNNNNNNNNNNNNNNNNNGTTTAATTTTGTTTTTATTTATGACAAAAGTTCCCATTT-T 2219
Query 6246 CCATTATAGTTT-ATGGCTAGTGTATTGATATAAAAATTAATGATACATTTCAATGATTG 6304
|| | | |||| || | |||| | | |||| |||| | || | | | ||||
Sbjct 2220 CCGTGAATGTTTTATAAAAACTGTACTTAAATAATGATTATTATTAAAACCTATTAATTG 2279
Query 6305 AATGTAATATTTTCGATTTTATTCAAAATCTCCCTTAGCTAGGCCTTATTACCCGCCAGT 6364
|| |||||| |||||||| |||| |||||||||||||||||||||||||| ||
Sbjct 2280 GATA----ATTTTC-ATTTTATTACAAATTTCCCTTAGCTAGGCCTTATTACCCGCAGGT 2334
Query 6365 ACCTTA 6370
| ||||
Sbjct 2335 ATCTTA 2340
Score = 80.6 bits (88), Expect = 4e-11
Identities = 73/91 (80%), Gaps = 2/91 (2%)
Strand=Plus/Plus
Query 5745 TTAAGAAGTTATTTATAAGGTACCCGAGGGTAACAAGGCCTGTCGGGTAATAAGGCCTAA 5804
||||||| ||| || ||||||| | |||||| ||| |||||| |||||||||||||
Sbjct 1263 TTAAGAAAATATGTA--AGGTACCTGCGGGTAATTAGGTCTGTCGACTAATAAGGCCTAA 1320
Query 5805 GTGATAGAAATGATATTTAAAATAACCGCTT 5835
|||| | |||| |||||| ||||| |||||
Sbjct 1321 GTGACAAAAATCGTATTTATAATAATCGCTT 1351
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 68310642366648
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |