Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_006657.1
Length=19820
Score E
Sequences producing significant alignments: (Bits) Value
seq3738 114 2e-21
seq6588 87.8 2e-13
>seq3738
Length=9853
Score = 114 bits (126), Expect = 2e-21
Identities = 258/382 (68%), Gaps = 12/382 (3%)
Strand=Plus/Plus
Query 12231 TTTCATCAAAGAATGCCATAGCTACAGTTTCTGGGTTTAAATACCACAAATG-CATGCTA 12289
|||||||||| || ||||| || | |||||||| || | ||||||| ||| | || ||
Sbjct 3265 TTTCATCAAAAAAAGCCATTGCGGCTGTTTCTGGATTCAGGTACCACAGATGGCCTG-TA 3323
Query 12290 AATTTTTTCAATGCCACTTCAGATATTTTAGCATCTGTCGATTGATAATCAATAAGTTCC 12349
||||||||||||| | | ||| ||| || || | || ||||| | ||
Sbjct 3324 AATTTTTTCAATGTAGCATTAGAAATTGCAGAGTCGATTGACTGATAGTTCTGGAGCGTT 3383
Query 12350 TTTAAAAATGATAAATCATTATTTGGAGCTTCAGATGCGAGAGGACAAGTGAACCATGCT 12409
||||||||| || | ||||| ||||||| || || || || || |||||||||
Sbjct 3384 TTTAAAAATTGCAAGTGGTTATTAGGAGCTTGAGTGGCAAGTGGTGCGGTAAACCATGCT 3443
Query 12410 TTGATATACACTGTAGCAATAAAAACACAAATTTCAGAAACGGATTTGATT----AATTT 12465
|| | ||| ||| | ||||||| |||||| || | |||| ||| |||
Sbjct 3444 TTCACATAGACTAACACTATAAAAATACAAATATC----TCTGATTGAATTTTCCTCTTT 3499
Query 12466 CACCGTCATTTTGAATTGTTTACGAAATAAAAATATTTTTATAGTATATATGGCTTTTGC 12525
| || | |||||| ||| | ||| | ||||||||| | |||||| | || ||
Sbjct 3500 TGCTGTTAGTTTGAAACATTTTCTAAAAAGAAATATTTTCAAGCAATATATCACCTTAGC 3559
Query 12526 CATCCACCTAGCGTGGTGGAATGCACCCGGTTTTCGAAATTTTAC-TTAACTGCAGGGAA 12584
|||||| | || ||||||| ||||| || | |||||| | || || | | | | ||
Sbjct 3560 CATCCATCGGGCATGGTGGATGGCACCTGGATATCGAAAACTGACATTTTCAGGA-GAAA 3618
Query 12585 CTTTACCAATAAATATCTGAAC 12606
|||| || | ||| || |||||
Sbjct 3619 CTTTTCCTAAAAAGATTTGAAC 3640
>seq6588
Length=2849
Score = 87.8 bits (96), Expect = 2e-13
Identities = 154/222 (69%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 12224 GATATTCTTTCATCAAAGAATGCCATAGCTACAGTTTCTGGGTTTAAATACCACAAATGC 12283
|||||| |||||| || || | | ||||| ||||| || |||| ||||||||||||
Sbjct 2668 GATATTTGTTCATCGAAAAAGGATAATGCTACTGTTTCAGGATTTAGATACCACAAATGG 2609
Query 12284 ATGCTAAATTTTTTCAATGCCACTTCAGATATTTTAGCATCTGTCGATTGATAATCAATA 12343
| || |||||||||| || ||||| |||||||| ||| | || || |
Sbjct 2608 TTACTGAATTTTTTCACTGTAACTTCTGATATTTTTTCATTGATTTCTTTGTATTTCTGG 2549
Query 12344 AGTTCCTTTAAAAATGATAAATCATTATTTGGAGCTTCAGATGCGA-GAGGACAAGTGAA 12402
|||| || |||||| |||||||| ||||||||| | | | | |||| |||||
Sbjct 2548 AGTTTTTTCAAAAATTGTAAATCATGATTTGGAGCAGC-TACACTATTAGGAGCGGTGAA 2490
Query 12403 CCATGCTTTGATATACACTGTAGCAATAAAAACACAAATTTC 12444
||| |||| | ||| | | ||||||||| || |||||
Sbjct 2489 CCAGGCTTCAACATAGAGCATTACAATAAAAATGCATATTTC 2448
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 63293964588984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |