Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_006657.1 Length=19820 Score E Sequences producing significant alignments: (Bits) Value seq3738 114 2e-21 seq6588 87.8 2e-13 >seq3738 Length=9853 Score = 114 bits (126), Expect = 2e-21 Identities = 258/382 (68%), Gaps = 12/382 (3%) Strand=Plus/Plus Query 12231 TTTCATCAAAGAATGCCATAGCTACAGTTTCTGGGTTTAAATACCACAAATG-CATGCTA 12289 |||||||||| || ||||| || | |||||||| || | ||||||| ||| | || || Sbjct 3265 TTTCATCAAAAAAAGCCATTGCGGCTGTTTCTGGATTCAGGTACCACAGATGGCCTG-TA 3323 Query 12290 AATTTTTTCAATGCCACTTCAGATATTTTAGCATCTGTCGATTGATAATCAATAAGTTCC 12349 ||||||||||||| | | ||| ||| || || | || ||||| | || Sbjct 3324 AATTTTTTCAATGTAGCATTAGAAATTGCAGAGTCGATTGACTGATAGTTCTGGAGCGTT 3383 Query 12350 TTTAAAAATGATAAATCATTATTTGGAGCTTCAGATGCGAGAGGACAAGTGAACCATGCT 12409 ||||||||| || | ||||| ||||||| || || || || || ||||||||| Sbjct 3384 TTTAAAAATTGCAAGTGGTTATTAGGAGCTTGAGTGGCAAGTGGTGCGGTAAACCATGCT 3443 Query 12410 TTGATATACACTGTAGCAATAAAAACACAAATTTCAGAAACGGATTTGATT----AATTT 12465 || | ||| ||| | ||||||| |||||| || | |||| ||| ||| Sbjct 3444 TTCACATAGACTAACACTATAAAAATACAAATATC----TCTGATTGAATTTTCCTCTTT 3499 Query 12466 CACCGTCATTTTGAATTGTTTACGAAATAAAAATATTTTTATAGTATATATGGCTTTTGC 12525 | || | |||||| ||| | ||| | ||||||||| | |||||| | || || Sbjct 3500 TGCTGTTAGTTTGAAACATTTTCTAAAAAGAAATATTTTCAAGCAATATATCACCTTAGC 3559 Query 12526 CATCCACCTAGCGTGGTGGAATGCACCCGGTTTTCGAAATTTTAC-TTAACTGCAGGGAA 12584 |||||| | || ||||||| ||||| || | |||||| | || || | | | | || Sbjct 3560 CATCCATCGGGCATGGTGGATGGCACCTGGATATCGAAAACTGACATTTTCAGGA-GAAA 3618 Query 12585 CTTTACCAATAAATATCTGAAC 12606 |||| || | ||| || ||||| Sbjct 3619 CTTTTCCTAAAAAGATTTGAAC 3640 >seq6588 Length=2849 Score = 87.8 bits (96), Expect = 2e-13 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 12224 GATATTCTTTCATCAAAGAATGCCATAGCTACAGTTTCTGGGTTTAAATACCACAAATGC 12283 |||||| |||||| || || | | ||||| ||||| || |||| |||||||||||| Sbjct 2668 GATATTTGTTCATCGAAAAAGGATAATGCTACTGTTTCAGGATTTAGATACCACAAATGG 2609 Query 12284 ATGCTAAATTTTTTCAATGCCACTTCAGATATTTTAGCATCTGTCGATTGATAATCAATA 12343 | || |||||||||| || ||||| |||||||| ||| | || || | Sbjct 2608 TTACTGAATTTTTTCACTGTAACTTCTGATATTTTTTCATTGATTTCTTTGTATTTCTGG 2549 Query 12344 AGTTCCTTTAAAAATGATAAATCATTATTTGGAGCTTCAGATGCGA-GAGGACAAGTGAA 12402 |||| || |||||| |||||||| ||||||||| | | | | |||| ||||| Sbjct 2548 AGTTTTTTCAAAAATTGTAAATCATGATTTGGAGCAGC-TACACTATTAGGAGCGGTGAA 2490 Query 12403 CCATGCTTTGATATACACTGTAGCAATAAAAACACAAATTTC 12444 ||| |||| | ||| | | ||||||||| || ||||| Sbjct 2489 CCAGGCTTCAACATAGAGCATTACAATAAAAATGCATATTTC 2448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 63293964588984