Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq2028 239 5e-58
>seq2028
Length=154558
Score = 239 bits (264), Expect = 5e-58
Identities = 553/824 (67%), Gaps = 20/824 (2%)
Strand=Plus/Plus
Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243
||| | ||| || | ||| | ||||| ||||| ||||| || ||||| || || ||
Sbjct 59775 TTTCTTATATTCGCCCACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTGTAGAAAT-GA 59833
Query 21244 TTC-CATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATA 21302
| |||||| ||||| ||||| | | | ||||| || || || | ||| ||
Sbjct 59834 TCGTCATAAAGTCAAACGGATTCGTTGCACCATAGATTTTCTTGCAGCCTAATTCACTTA 59893
Query 21303 ATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCA 21362
| || | ||| ||||||||||||||||| |||||||| |||| |||||||| || ||||
Sbjct 59894 ACAAACGATCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCATTCCAATCA 59953
Query 21363 ATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTA 21422
| || || | ||| | | ||| || || |||||| | || || || |||| |
Sbjct 59954 GACTGACTGGCAAAGCCTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCTGCAATAA 60013
Query 21423 TATTTATTA-TCCTAGATGTACTAGGGG--GATACAATAATTGTTTAAACATCAAACATG 21479
|| | ||| || | ||| | | ||| || ||| || | || ||||
Sbjct 60014 TACTGGTTACTCTTTCTTGTGATGGTTTCTGATGCAGA---TGTGAGAATAGTAAGCATG 60070
Query 21480 CAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGG 21539
||||||||||||| | ||||||||| || ||| |||||||| ||||||||||||||||
Sbjct 60071 CAAAATCACAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTAAACCGG 60130
Query 21540 GCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAAT 21597
|||| | || | || |||||||| || || | ||||| | | |||||| |||||
Sbjct 60131 GCATAAGACCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAAA--AAAAT 60188
Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTT--ATCCAAT 21655
||| |||||||||||||| || || |||| ||| ||| | | ||| ||| | | |
Sbjct 60189 GCCTTCAACGGCAGCAAAAGCCACCAATCTTTCGCCGAACGAGGATGTTTTCGAGCTA-- 60246
Query 21656 ATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTT 21715
||||| ||| ||||| | || || | |||| ||| || || |||||||| ||
Sbjct 60247 ATCCACTTTAGGGCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGCGTTA 60306
Query 21716 AA-AAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACAT 21774
|| |||| | |||||||| |||| | || || |||||
Sbjct 60307 AACAAGA-ACTCTTTTTCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGTACAT 60365
Query 21775 TTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACA 21834
||||||||| |||||||| || || ||||| ||||| |||||||| | || || |
Sbjct 60366 TTCAGAATGGATATTTTCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAGTCAC 60425
Query 21835 TTGAACCTC-GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGG 21893
|||||| || || | ||| |||| | | || |||||||| || ||||| ||| |
Sbjct 60426 TTGAACTTCTTGACTGAAA-CGTTCCACAAGATTCTCATTTACAATACCATCTGAGGCAG 60484
Query 21894 CAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAAT 21953
||||||| || || | | || |||| |||||| | | | | | ||| | ||| |
Sbjct 60485 CAAAAAAAGCTAACACGTGCGAAATGAAATGTCGTTCTTCAGATTTCAGTTTCTCCCAGT 60544
Query 21954 CTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAG 21997
| || ||| | | | || ||||| || || |||||||||
Sbjct 60545 GTCGTAGATCATGGGTGAGGTCCACTTCCTCGGTAGTCCAAAAG 60588
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531795111311040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |