Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2028 239 5e-58 >seq2028 Length=154558 Score = 239 bits (264), Expect = 5e-58 Identities = 553/824 (67%), Gaps = 20/824 (2%) Strand=Plus/Plus Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 ||| | ||| || | ||| | ||||| ||||| ||||| || ||||| || || || Sbjct 59775 TTTCTTATATTCGCCCACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTGTAGAAAT-GA 59833 Query 21244 TTC-CATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATA 21302 | |||||| ||||| ||||| | | | ||||| || || || | ||| || Sbjct 59834 TCGTCATAAAGTCAAACGGATTCGTTGCACCATAGATTTTCTTGCAGCCTAATTCACTTA 59893 Query 21303 ATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCA 21362 | || | ||| ||||||||||||||||| |||||||| |||| |||||||| || |||| Sbjct 59894 ACAAACGATCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCATTCCAATCA 59953 Query 21363 ATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTA 21422 | || || | ||| | | ||| || || |||||| | || || || |||| | Sbjct 59954 GACTGACTGGCAAAGCCTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCTGCAATAA 60013 Query 21423 TATTTATTA-TCCTAGATGTACTAGGGG--GATACAATAATTGTTTAAACATCAAACATG 21479 || | ||| || | ||| | | ||| || ||| || | || |||| Sbjct 60014 TACTGGTTACTCTTTCTTGTGATGGTTTCTGATGCAGA---TGTGAGAATAGTAAGCATG 60070 Query 21480 CAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGG 21539 ||||||||||||| | ||||||||| || ||| |||||||| |||||||||||||||| Sbjct 60071 CAAAATCACAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTAAACCGG 60130 Query 21540 GCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAAT 21597 |||| | || | || |||||||| || || | ||||| | | |||||| ||||| Sbjct 60131 GCATAAGACCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAAA--AAAAT 60188 Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTT--ATCCAAT 21655 ||| |||||||||||||| || || |||| ||| ||| | | ||| ||| | | | Sbjct 60189 GCCTTCAACGGCAGCAAAAGCCACCAATCTTTCGCCGAACGAGGATGTTTTCGAGCTA-- 60246 Query 21656 ATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTT 21715 ||||| ||| ||||| | || || | |||| ||| || || |||||||| || Sbjct 60247 ATCCACTTTAGGGCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGCGTTA 60306 Query 21716 AA-AAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACAT 21774 || |||| | |||||||| |||| | || || ||||| Sbjct 60307 AACAAGA-ACTCTTTTTCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGTACAT 60365 Query 21775 TTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACA 21834 ||||||||| |||||||| || || ||||| ||||| |||||||| | || || | Sbjct 60366 TTCAGAATGGATATTTTCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAGTCAC 60425 Query 21835 TTGAACCTC-GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGG 21893 |||||| || || | ||| |||| | | || |||||||| || ||||| ||| | Sbjct 60426 TTGAACTTCTTGACTGAAA-CGTTCCACAAGATTCTCATTTACAATACCATCTGAGGCAG 60484 Query 21894 CAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAAT 21953 ||||||| || || | | || |||| |||||| | | | | | ||| | ||| | Sbjct 60485 CAAAAAAAGCTAACACGTGCGAAATGAAATGTCGTTCTTCAGATTTCAGTTTCTCCCAGT 60544 Query 21954 CTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAG 21997 | || ||| | | | || ||||| || || ||||||||| Sbjct 60545 GTCGTAGATCATGGGTGAGGTCCACTTCCTCGGTAGTCCAAAAG 60588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531795111311040