Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq2028 266 4e-66
seq820 156 5e-33
>seq2028
Length=154558
Score = 266 bits (294), Expect = 4e-66
Identities = 586/875 (67%), Gaps = 9/875 (1%)
Strand=Plus/Plus
Query 33019 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATG 33078
||||| ||||| ||||| ||||| || ||||| ||||| || || | |||
Sbjct 59782 TATTCGCCCACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTGTAGAAATGATCGTCATA 59841
Query 33079 AAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTA 33138
|| ||||||||||| || || ||| ||||| || | || |||||| | ||| | |
Sbjct 59842 AAGTCAAACGGATTCGTTGCACCATAGATTTTCTTGCAGCCTAATTCACTTAACAAACGA 59901
Query 33139 TCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 33198
|| || || ||||||||||| ||||| || ||||||||||| || || | |||
Sbjct 59902 TCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCATTCCAATCAGACTGACT 59961
Query 33199 GGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTA 33258
|| | |||| ||| | || |||||||| || | || ||||||| |||||| |
Sbjct 59962 GGCAAAGCCTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCTGCAATAATACTGGTT 60021
Query 33259 ACGGTTTCTTCACTCGGT---GGATGCAATAAATGTTTAAACATCAAACATGCGAAATCG 33315
|| |||||| ||| ||||| | |||| || | || ||||| |||||
Sbjct 60022 ACTCTTTCTTGTGATGGTTTCTGATGC---AGATGTGAGAATAGTAAGCATGCAAAATCA 60078
Query 33316 CAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGG 33375
|| || ||||| || ||||| || | ||| || ||||| || | |||||||| ||
Sbjct 60079 CAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTAAACCGGGCATAAGA 60138
Query 33376 CCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACT 33435
||||| || || | ||| || || | || || ||| || || || ||||| ||
Sbjct 60139 CCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAAAAAAATGCCTTCAACG 60198
Query 33436 GCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCTGTCATG--TATCCACTTTTGA 33492
|||||||| || | | ||| || || | || | | || | ||||||||| |
Sbjct 60199 GCAGCAAAAGCCACCAATCTTTCGCCGAACGAGGATGTTTTCGAGCTAATCCACTTTAGG 60258
Query 33493 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33552
|||||||| || ||||| || ||||| ||||| ||||| || || ||||| | | | |
Sbjct 60259 GCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGCGTTAAACAAGAACTCT 60318
Query 33553 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33612
|||||||| ||| | | ||| || || || | || |||||||| ||||| ||
Sbjct 60319 TTTTCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGTACATTTCAGAATGGATA 60378
Query 33613 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 33672
|||||||| || ||||| ||||| || ||||| | ||| || || | || |||||| |
Sbjct 60379 TTTTCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAGTCACTTGAACTTCTTGA 60438
Query 33673 CAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 33732
| || |||||| | | ||| ||||| || || || || ||| |||||||| || ||
Sbjct 60439 CTGAAACGTTCCACAAGATTCTCATTTACAATACCATCTGAGGCAGCAAAAAAAGCTAAC 60498
Query 33733 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 33792
|| || || |||| | ||| || | | | ||||| | ||| | | ||| |
Sbjct 60499 ACGTGCGAAATGAAATGTCGTTCTTCAGATTTCAGTTTCTCCCAGTGTCGTAGATCATGG 60558
Query 33793 GATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAG 33852
| | || ||||| || |||||||| || || || || | || || | | |||
Sbjct 60559 GTGAGGTCCACTTCCTCGGTAGTCCAAAAGGAAGCTTCAGCTTCCTTGTATTTCTGCCAA 60618
Query 33853 ATGTCATAATATTGGATTGGGAAAATAACAAATCT 33887
|| || ||| |||||||| | |||||||||
Sbjct 60619 ATATCTGGGAATTCAATTGGGAATAAAACAAATCT 60653
>seq820
Length=22770
Score = 156 bits (172), Expect = 5e-33
Identities = 247/351 (70%), Gaps = 6/351 (2%)
Strand=Plus/Minus
Query 62724 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62783
||||||| || |||||||||||||||||||||||||| || |||| |||||||| | |
Sbjct 21554 CCTTGAATTCCTATACCGATAGGTCTATGTCTCTTATTGGAATTTTCTGCTTCTGGTAGA 21495
Query 62784 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62843
|| ||||| || ||||| ||||| ||||| | ||||| | || ||| | ||
Sbjct 21494 GGGTAATAGTTTATATCGATAATCTTATTCAAGTTTCTAGTCACTATTTTAGTGATATTT 21435
Query 62844 TTCAGTTTGAGAAAATCAAATCGC---CCATCT--ATT-ACAAACATGTTCAAGGCAACA 62897
|| ||||| ||||||||| | | | |||| ||| ||||||||||||| | |
Sbjct 21434 TTGAGTTTTTCAAAATCAAAACTCTTTCTATCTGCATTAACAAACATGTTCACAGGTATT 21375
Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62957
|| ||||||||||| || || | || | | || |||| || || |||| |||
Sbjct 21374 GAAGCCAGATTACAGACAGCAATTTCGTCGGGCGACGTGTATTCTACGATTTCAGAACAA 21315
Query 62958 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63017
|| ||||| | || || ||| || || | ||||||| ||| | || || || ||
Sbjct 21314 AGGTTACTGCCTTTTATCACTCCCAAGTTCTTTTGATTAGATTTTCTATTGCAAGCGTCT 21255
Query 63018 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 63068
|| ||||| || | |||||||||||||| | ||||| || ||| |||
Sbjct 21254 TTGTAAAGCATATAAGGAGTACCAGTTTCTACTTGAGAAGTTACAATGGCT 21204
Score = 114 bits (126), Expect = 2e-20
Identities = 280/423 (66%), Gaps = 6/423 (1%)
Strand=Plus/Minus
Query 63294 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63353
||||| |||| | || | | || ||| | |||||| |||||||| || || || | |
Sbjct 19999 TTTTTGAGATTCAAAAAGTCAAAAACATCCGCATGCCATGGTTCCAAATAAATAGCGAAA 19940
Query 63354 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63413
||||||| | ||| || || |||||||| | ||| | || || |||||| | ||| |
Sbjct 19939 GCTCCAGGTCTTTTATTACCACCCTGATCCACATATTTGGCAGTATTATTAAACACTTTA 19880
Query 63414 AACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCA 63473
| ||| |||| | ||| || || | ||||| || || | ||||| | || ||
Sbjct 19879 AGCATAGGAACGAGACCATTGGAAGTGCCATTTGTGCCAGCAATATAAGTGCCTTGTGCT 19820
Query 63474 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63533
| ||||||| || || ||| ||||| ||||| |||| || || | || ||| |
Sbjct 19819 CTAATATTATGAACATTTACACCAATTCCTCCTGCATTTTTTGAAATGATAGCACATTGA 19760
Query 63534 TTTA---ACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAG 63590
| | || ||| | || ||||| | ||||| || ||| | || | |||||
Sbjct 19759 GTGAGACACTTGTAA---ATTCCCTCAAGACTATCCTCAGGCATCATTAGCAAGAAACAA 19703
Query 63591 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63650
||||| ||| | | || | ||||||||||| |||||| || ||||| ||
Sbjct 19702 GAAGACAATTGTGGTCTTGGTGTAGCTGCATTAAATAACGTAGGACTGGCATGCGTGAAA 19643
Query 63651 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63710
|||||| || || |||||| || |||||||| | || || ||| | ||||||
Sbjct 19642 TATTTTTGTGATAGATAATTGTAAGTTTCAATAGCGGCCTCAATGTCCTCTCCATGAATG 19583
Query 63711 CCT 63713
|||
Sbjct 19582 CCT 19580
Score = 111 bits (122), Expect = 2e-19
Identities = 115/151 (76%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 63711 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63770
|||| ||| || | ||| | ||| || ||||||||||| || || ||| || |||||
Sbjct 19526 CCTATTGCTACTCTCATAAGCATATGTTGAGGTCTTTCGACAATTTTGCCATTAATTTTT 19467
Query 63771 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63830
|| || || || |||||| |||||||||||||||||||||||| ||||| |||| ||
Sbjct 19466 AATAAATAAGACCTTTCCAGAGTTTTAAAACCAAAATAGTTGTAAGAAAAATCTCTGTCA 19407
Query 63831 TAAATAATAACCGAGTTGAGTTTATCCTTAT 63861
|| |||||| || || ||| |||||||
Sbjct 19406 TAGATAATATTGGAATTTAGTCGGTCCTTAT 19376
Score = 100 bits (110), Expect = 4e-16
Identities = 136/188 (72%), Gaps = 4/188 (2%)
Strand=Plus/Minus
Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396
|| || ||||| || || | ||||| ||||||||||| ||||| || || ||||| |
Sbjct 22051 ACCTGGAATTCGCCTGAAAGCACTCTACGAGTGTAAATGTTACTAGTGTAGGGTTCAATA 21992
Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456
|||||| || || ||||||||||||||||| || || |||||||| |||| | ||
Sbjct 21991 CTCTCATTGTTGCCTAAAATTTGAGCAGTTGAAGCTGTAGGCATAGGAGCCAATAGCAAG 21932
Query 62457 CTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGAT 62514
||||| | || ||||| | ||||| |||| | | ||||||| ||| | ||
Sbjct 21931 GAGTTTCTTAATCC--ATGTTTGGCAATTTTTACTTTCAATGCATCCCAATCCCATAAAT 21874
Query 62515 CCGACGGT 62522
| ||||||
Sbjct 21873 CTGACGGT 21866
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622823420391360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |