Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2028 266 4e-66 seq820 156 5e-33 >seq2028 Length=154558 Score = 266 bits (294), Expect = 4e-66 Identities = 586/875 (67%), Gaps = 9/875 (1%) Strand=Plus/Plus Query 33019 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATG 33078 ||||| ||||| ||||| ||||| || ||||| ||||| || || | ||| Sbjct 59782 TATTCGCCCACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTGTAGAAATGATCGTCATA 59841 Query 33079 AAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTA 33138 || ||||||||||| || || ||| ||||| || | || |||||| | ||| | | Sbjct 59842 AAGTCAAACGGATTCGTTGCACCATAGATTTTCTTGCAGCCTAATTCACTTAACAAACGA 59901 Query 33139 TCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 33198 || || || ||||||||||| ||||| || ||||||||||| || || | ||| Sbjct 59902 TCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCATTCCAATCAGACTGACT 59961 Query 33199 GGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTA 33258 || | |||| ||| | || |||||||| || | || ||||||| |||||| | Sbjct 59962 GGCAAAGCCTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCTGCAATAATACTGGTT 60021 Query 33259 ACGGTTTCTTCACTCGGT---GGATGCAATAAATGTTTAAACATCAAACATGCGAAATCG 33315 || |||||| ||| ||||| | |||| || | || ||||| ||||| Sbjct 60022 ACTCTTTCTTGTGATGGTTTCTGATGC---AGATGTGAGAATAGTAAGCATGCAAAATCA 60078 Query 33316 CAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGG 33375 || || ||||| || ||||| || | ||| || ||||| || | |||||||| || Sbjct 60079 CAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTAAACCGGGCATAAGA 60138 Query 33376 CCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACT 33435 ||||| || || | ||| || || | || || ||| || || || ||||| || Sbjct 60139 CCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAAAAAAATGCCTTCAACG 60198 Query 33436 GCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCTGTCATG--TATCCACTTTTGA 33492 |||||||| || | | ||| || || | || | | || | ||||||||| | Sbjct 60199 GCAGCAAAAGCCACCAATCTTTCGCCGAACGAGGATGTTTTCGAGCTAATCCACTTTAGG 60258 Query 33493 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33552 |||||||| || ||||| || ||||| ||||| ||||| || || ||||| | | | | Sbjct 60259 GCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGCGTTAAACAAGAACTCT 60318 Query 33553 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33612 |||||||| ||| | | ||| || || || | || |||||||| ||||| || Sbjct 60319 TTTTCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGTACATTTCAGAATGGATA 60378 Query 33613 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 33672 |||||||| || ||||| ||||| || ||||| | ||| || || | || |||||| | Sbjct 60379 TTTTCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAGTCACTTGAACTTCTTGA 60438 Query 33673 CAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 33732 | || |||||| | | ||| ||||| || || || || ||| |||||||| || || Sbjct 60439 CTGAAACGTTCCACAAGATTCTCATTTACAATACCATCTGAGGCAGCAAAAAAAGCTAAC 60498 Query 33733 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 33792 || || || |||| | ||| || | | | ||||| | ||| | | ||| | Sbjct 60499 ACGTGCGAAATGAAATGTCGTTCTTCAGATTTCAGTTTCTCCCAGTGTCGTAGATCATGG 60558 Query 33793 GATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAG 33852 | | || ||||| || |||||||| || || || || | || || | | ||| Sbjct 60559 GTGAGGTCCACTTCCTCGGTAGTCCAAAAGGAAGCTTCAGCTTCCTTGTATTTCTGCCAA 60618 Query 33853 ATGTCATAATATTGGATTGGGAAAATAACAAATCT 33887 || || ||| |||||||| | ||||||||| Sbjct 60619 ATATCTGGGAATTCAATTGGGAATAAAACAAATCT 60653 >seq820 Length=22770 Score = 156 bits (172), Expect = 5e-33 Identities = 247/351 (70%), Gaps = 6/351 (2%) Strand=Plus/Minus Query 62724 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62783 ||||||| || |||||||||||||||||||||||||| || |||| |||||||| | | Sbjct 21554 CCTTGAATTCCTATACCGATAGGTCTATGTCTCTTATTGGAATTTTCTGCTTCTGGTAGA 21495 Query 62784 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62843 || ||||| || ||||| ||||| ||||| | ||||| | || ||| | || Sbjct 21494 GGGTAATAGTTTATATCGATAATCTTATTCAAGTTTCTAGTCACTATTTTAGTGATATTT 21435 Query 62844 TTCAGTTTGAGAAAATCAAATCGC---CCATCT--ATT-ACAAACATGTTCAAGGCAACA 62897 || ||||| ||||||||| | | | |||| ||| ||||||||||||| | | Sbjct 21434 TTGAGTTTTTCAAAATCAAAACTCTTTCTATCTGCATTAACAAACATGTTCACAGGTATT 21375 Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62957 || ||||||||||| || || | || | | || |||| || || |||| ||| Sbjct 21374 GAAGCCAGATTACAGACAGCAATTTCGTCGGGCGACGTGTATTCTACGATTTCAGAACAA 21315 Query 62958 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63017 || ||||| | || || ||| || || | ||||||| ||| | || || || || Sbjct 21314 AGGTTACTGCCTTTTATCACTCCCAAGTTCTTTTGATTAGATTTTCTATTGCAAGCGTCT 21255 Query 63018 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 63068 || ||||| || | |||||||||||||| | ||||| || ||| ||| Sbjct 21254 TTGTAAAGCATATAAGGAGTACCAGTTTCTACTTGAGAAGTTACAATGGCT 21204 Score = 114 bits (126), Expect = 2e-20 Identities = 280/423 (66%), Gaps = 6/423 (1%) Strand=Plus/Minus Query 63294 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63353 ||||| |||| | || | | || ||| | |||||| |||||||| || || || | | Sbjct 19999 TTTTTGAGATTCAAAAAGTCAAAAACATCCGCATGCCATGGTTCCAAATAAATAGCGAAA 19940 Query 63354 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63413 ||||||| | ||| || || |||||||| | ||| | || || |||||| | ||| | Sbjct 19939 GCTCCAGGTCTTTTATTACCACCCTGATCCACATATTTGGCAGTATTATTAAACACTTTA 19880 Query 63414 AACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCA 63473 | ||| |||| | ||| || || | ||||| || || | ||||| | || || Sbjct 19879 AGCATAGGAACGAGACCATTGGAAGTGCCATTTGTGCCAGCAATATAAGTGCCTTGTGCT 19820 Query 63474 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63533 | ||||||| || || ||| ||||| ||||| |||| || || | || ||| | Sbjct 19819 CTAATATTATGAACATTTACACCAATTCCTCCTGCATTTTTTGAAATGATAGCACATTGA 19760 Query 63534 TTTA---ACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAG 63590 | | || ||| | || ||||| | ||||| || ||| | || | ||||| Sbjct 19759 GTGAGACACTTGTAA---ATTCCCTCAAGACTATCCTCAGGCATCATTAGCAAGAAACAA 19703 Query 63591 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63650 ||||| ||| | | || | ||||||||||| |||||| || ||||| || Sbjct 19702 GAAGACAATTGTGGTCTTGGTGTAGCTGCATTAAATAACGTAGGACTGGCATGCGTGAAA 19643 Query 63651 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63710 |||||| || || |||||| || |||||||| | || || ||| | |||||| Sbjct 19642 TATTTTTGTGATAGATAATTGTAAGTTTCAATAGCGGCCTCAATGTCCTCTCCATGAATG 19583 Query 63711 CCT 63713 ||| Sbjct 19582 CCT 19580 Score = 111 bits (122), Expect = 2e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 63711 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63770 |||| ||| || | ||| | ||| || ||||||||||| || || ||| || ||||| Sbjct 19526 CCTATTGCTACTCTCATAAGCATATGTTGAGGTCTTTCGACAATTTTGCCATTAATTTTT 19467 Query 63771 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63830 || || || || |||||| |||||||||||||||||||||||| ||||| |||| || Sbjct 19466 AATAAATAAGACCTTTCCAGAGTTTTAAAACCAAAATAGTTGTAAGAAAAATCTCTGTCA 19407 Query 63831 TAAATAATAACCGAGTTGAGTTTATCCTTAT 63861 || |||||| || || ||| ||||||| Sbjct 19406 TAGATAATATTGGAATTTAGTCGGTCCTTAT 19376 Score = 100 bits (110), Expect = 4e-16 Identities = 136/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || || ||||| || || | ||||| ||||||||||| ||||| || || ||||| | Sbjct 22051 ACCTGGAATTCGCCTGAAAGCACTCTACGAGTGTAAATGTTACTAGTGTAGGGTTCAATA 21992 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 |||||| || || ||||||||||||||||| || || |||||||| |||| | || Sbjct 21991 CTCTCATTGTTGCCTAAAATTTGAGCAGTTGAAGCTGTAGGCATAGGAGCCAATAGCAAG 21932 Query 62457 CTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGAT 62514 ||||| | || ||||| | ||||| |||| | | ||||||| ||| | || Sbjct 21931 GAGTTTCTTAATCC--ATGTTTGGCAATTTTTACTTTCAATGCATCCCAATCCCATAAAT 21874 Query 62515 CCGACGGT 62522 | |||||| Sbjct 21873 CTGACGGT 21866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622823420391360