Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2028 147 6e-30 seq820 107 5e-18 >seq2028 Length=154558 Score = 147 bits (162), Expect = 6e-30 Identities = 353/524 (67%), Gaps = 20/524 (4%) Strand=Plus/Minus Query 22433 TTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAAC---AATGAACGT--TCATTCGC 22487 ||||||| || || |||||||| || || ||||| | | || ||| | || |||| Sbjct 60280 TTAAGAAGAAAGCTGATTGGGCCCTAAAGTGGATTAGCTCGAA--AACATCCTCGTTCGG 60223 Query 22488 GGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCATTTTGTG 22546 ||| | | | || ||||||| |||||||||||||| || ||| ||| ||| | Sbjct 60222 CGAAAGATTGGTGGCTTTTGCTGCCGTTGAAGGCATTTTTTTCAGTGGTAGC-TTTGCAG 60164 Query 22547 CAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAA 22606 | || || ||| |||| ||||||| ||||||| ||| |||| ||||||||||| || | Sbjct 60163 CGATTTTCTGGTTAAAGAAACGTGGTCTTATGCCCGGTTTAACATTTTCAAATGAATTGA 60104 Query 22607 TTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCA 22666 | | ||||||| ||||| ||| |||||||| || | |||| || | ||| | Sbjct 60103 TATCCAGAGATGAAGGTCTACATTGTGATTTTGCATGCTTACTAT-TCTCA--CATCTGC 60047 Query 22667 TTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAAC 22726 ||| |||| || | |||| ||| ||||||| || |||||||| | | |||| Sbjct 60046 ATCAGAAACCATCACAAGAAAGAGTAACCAGTATTATTGCAGATGCAGTTACAATAGAAC 59987 Query 22727 GTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGA 22786 || | | ||||| || ||||| ||||| ||||| || ||| | ||| ||| Sbjct 59986 AAGAGTTCTTGTCTGAGGCTTTGCCAGTCAGTCTGATTGGAATGAATTGCAAATTGATGT 59927 Query 22787 GTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATT 22846 || ||||| ||||||| || |||||| | |||| | | | || ||||| | | Sbjct 59926 GTCAGTATATAGAATTTGTAGCTGATCGTTTGTTAAGTGAATTAGG--CTGCAAGAAAAT 59869 Query 22847 ATAACGT----CGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACC 22902 || || || ||||| ||||| | ||| | ||||| ||||| || || Sbjct 59868 CTATGGTGCAACG--AATCCGTTTGACTTTATGACGATCATTTCTACAGAAGGTAAAACA 59811 Query 22903 AATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGT 22946 || || || ||||| | ||| || ||||| | |||| ||||| Sbjct 59810 AACTTTTTTGAAAAGAAAGTGGGCGAATATAAGAAAGTTGGTGT 59767 >seq820 Length=22770 Score = 107 bits (118), Expect = 5e-18 Identities = 240/354 (68%), Gaps = 15/354 (4%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 |||||||| |||| || || | | ||||| | || | | ||||| |||||||| Sbjct 19644 TTCACGCATGCCAGTCCTACGTTATTTAATGCAGCTACACCAAGACCACAATTGTCTTCT 19703 Query 363607 TGCTTTCTT-CTAAAAATGAAGGACGATTCCATCGAGGGTATCTT----TGACACACTTA 363661 || |||||| |||| ||| || ||| | ||||| || | || | |||| | Sbjct 19704 TG-TTTCTTGCTAATGATGCCTGAGGATAGTCTTGAGGGAATTTACAAGTGTCTCACTCA 19762 Query 363662 AGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTC 363721 | |||||| | ||||| || |||||||| |||||||||||| | || ||| || Sbjct 19763 A----TGTGCTATCATTTCAAAAAATGCAGGAGGAATTGGTGTAAATGTTCATAATATTA 19818 Query 363722 GTGCACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGC 363781 | ||||| || ||| ||| |||||| || || ||||| || ||||| |||| Sbjct 19819 GAGCACAAGGCACTTATATTGCTGGCACAAATGGCACTTCCAATGGTCTCGTTCCTATGC 19878 Query 363782 TTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGG--AGGAAAGCGCAAAGG 363839 || |||||| | |||||||| | || || || |||||||| | |||| | || Sbjct 19879 TTAAAGTGTTTAATAATACTGCCAAATATGTGGATCAGGGTGGTAATAAAAGACC--TGG 19936 Query 363840 GGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGA 363893 || || ||||| ||| | || || ||||| ||| ||||||| ||| |||| Sbjct 19937 AGCTTTCGCTATTTATTTGGAACCATGGCATGCGGATGTTTTTGACTTT-TTGA 19989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303088149230672