Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4409 122 8e-23 seq2259 113 4e-20 seq1411 95.1 1e-14 >seq4409 Length=33873 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || || ||||| ||||||| ||| || ||||||||||| || |||||| Sbjct 17984 GCCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGA 17925 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || ||| || || || ||||| ||| |||| || | ||||||||| || || Sbjct 17924 CAAAGTCCGTCCGTCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGG 17865 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||||||| ||||| ||| ||| ||| || | | || | ||| || | | |||| Sbjct 17864 AATTCCTTCCTTGTCC-TGAATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGA 17806 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || |||| || ||||||||||||||||| Sbjct 17805 CCTCAAGAGTGATGGTCTTGCCCGTTAAGGTCTTTACGAAAATCTGCAT 17757 >seq2259 Length=79244 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||| | || || || || | ||| ||||||||||| || || || ||| Sbjct 78062 CCACCTCTCAATCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCGGAG 78121 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| || || || || || |||| ||||| || ||||| || ||| Sbjct 78122 AGGGTGCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGG 78181 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| ||| | | || | || |||| | |||| Sbjct 78182 ATACCTTCTTTGTCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCGACC 78241 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| ||||| || |||||||| |||||||| ||||| Sbjct 78242 TCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288 >seq1411 Length=135556 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| ||||||| ||| ||||||||||| |||||||| || Sbjct 108814 CCACCACGAAGACGGAGCACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAG 108755 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || || || || ||| |||| || | |||||| || ||||| Sbjct 108754 AGAGTACGTCCATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGGA 108695 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 |||||||||||||| ||| ||| |||| Sbjct 108694 ATTCCTTCTTTGTC-TTGAATTTTGGCTT 108667 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 131044 TCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAG 131103 || ||||| |||||||| || | |||||| ||| || ||||| || || ||| || Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831 Query 131104 ATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TG 131162 || | ||| || ||||| || ||||| ||||| ||||| ||| | | ||||| | | Sbjct 105830 ATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCC-TGAATCTTTGCTTTCACGTT 105772 Query 131163 CTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 || | ||| |||| | || | || | || | ||||||||| || || ||||| || Sbjct 105771 TTCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCAC 105712 Query 131223 GAAAATCTGCAT 131234 |||||||||||| Sbjct 105711 GAAAATCTGCAT 105700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471919011056640