Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq4409 116 2e-21
seq1411 111 1e-19
seq4250 102 5e-17
seq2259 102 5e-17
>seq4409
Length=33873
Score = 116 bits (128), Expect = 2e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|||||||||| || | ||||||||| | || |||||||||||||| ||||| |||
Sbjct 17983 CCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGAC 17924
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
||| ||| |||| || | |||||| ||||| || || | | || || || | ||
Sbjct 17923 AAAGTCCGTCCGTCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGGA 17864
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAAC 38269
| ||||| |||||| ||||||| ||| ||||| | | ||| || | || ||| ||
Sbjct 17863 ATTCCTTCCTTGTCCTGAATTTTTGCCTTTACATTTTCAATAGTGTC-CGACGGTTCGAC 17805
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || || || || ||||| ||||| || ||||| ||||||||
Sbjct 17804 CTCAAGAGTGATGGTCTTGCCCGTTAAGGTCTTTACGAAAATCTGCAT 17757
>seq1411
Length=135556
Score = 111 bits (122), Expect = 1e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186
|| ||||| || ||||| || || | || |||| || | ||||| || || ||
Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831
Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246
|| || |||||||| || | ||||| ||||| |||||| ||| ||| ||||| ||
Sbjct 105830 ATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACGTTT 105771
Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306
| || ||| || | ||||||||| ||||| || |||||||| || | ||||||||||
Sbjct 105770 TCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCACG 105711
Query 38307 AATATCTGCAT 38317
|| ||||||||
Sbjct 105710 AAAATCTGCAT 105700
>seq4250
Length=37467
Score = 102 bits (112), Expect = 5e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 6235 AGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTA 6294
|||| || |||||||| |||||||| || || || ||||| || ||| ||||||| || |
Sbjct 16144 AGGTTGAAGGTAAGGGTAACGGTATAAAGACGGTTATTGTGAATATGGCTGAAGTAGCAA 16203
Query 6295 AGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTC 6354
|||| || || | || | || ||||| || ||||||||||| |||||| | || || |
Sbjct 16204 AGGCTCTTGGCAGACCGCCTACTTACCCCACCAAATATTTCGGATGCGAATTGGGAGCGC 16263
Query 6355 AGACGCAGTTTGAT 6368
| || | |||||||
Sbjct 16264 AAACTCTGTTTGAT 16277
>seq2259
Length=79244
Score = 102 bits (112), Expect = 5e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||||||||| | | ||||| || || ||| ||||||||| ||||| || || |
Sbjct 78060 TACCACCTCTCAATCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCGG 78119
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | || | || || | |||||| || ||||| || | |||||||| || | ||
Sbjct 78120 AGAGGGTGCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGG 78179
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| |||||||||||| |||||| ||| ||||| | | || || ||| |
Sbjct 78180 GGATACCTTCTTTGTCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCGA 78239
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || | || || || ||||| || | ||||||||||| || |||||
Sbjct 78240 CCTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334882309841576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |