Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq2028 284 2e-71
seq820 156 5e-33
>seq2028
Length=154558
Score = 284 bits (314), Expect = 2e-71
Identities = 590/875 (67%), Gaps = 9/875 (1%)
Strand=Plus/Plus
Query 32376 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATG 32435
||||| ||||| ||||| ||||| || |||||||||||| || || | |||
Sbjct 59782 TATTCGCCCACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTGTAGAAATGATCGTCATA 59841
Query 32436 AAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTA 32495
|| || || ||||| || || ||| ||||| || | || |||||| | ||| | |
Sbjct 59842 AAGTCAAACGGATTCGTTGCACCATAGATTTTCTTGCAGCCTAATTCACTTAACAAACGA 59901
Query 32496 TCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 32555
|| || |||||||||||||| ||||| || ||||||||||| || || | |||
Sbjct 59902 TCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCATTCCAATCAGACTGACT 59961
Query 32556 GGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTT 32615
|| | |||| ||| | || |||||||| || | || || |||| |||||| ||
Sbjct 59962 GGCAAAGCCTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCTGCAATAATACTGGTT 60021
Query 32616 ACTGTTTCTTCACTCGGT---GGATACAATAAATGTTTAAACATCAAACATGCGAAATCG 32672
||| |||||| ||| ||| | | |||| || | || ||||| |||||
Sbjct 60022 ACTCTTTCTTGTGATGGTTTCTGATGC---AGATGTGAGAATAGTAAGCATGCAAAATCA 60078
Query 32673 CAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGG 32732
|| |||||||| || ||||| || ||||| || ||||| || | |||||||| ||
Sbjct 60079 CAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTAAACCGGGCATAAGA 60138
Query 32733 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACT 32792
||||| || || | ||| || || | ||||| ||| || ||||| ||||| ||
Sbjct 60139 CCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAAAAAAATGCCTTCAACG 60198
Query 32793 GCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCTGTCATG--TATCCACTTTTGA 32849
|| ||||| || | | ||| || || | || | | || | ||||||||| |
Sbjct 60199 GCAGCAAAAGCCACCAATCTTTCGCCGAACGAGGATGTTTTCGAGCTAATCCACTTTAGG 60258
Query 32850 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 32909
|||||||| || ||||| || ||||| ||||| || || ||||| ||||| | | | |
Sbjct 60259 GCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGCGTTAAACAAGAACTCT 60318
Query 32910 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 32969
|||||||| ||| | | ||| || ||||| | || |||||||| ||||| ||
Sbjct 60319 TTTTCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGTACATTTCAGAATGGATA 60378
Query 32970 TTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTA 33029
|||||||| || || || ||||| || || || | ||| || || | || |||||| |
Sbjct 60379 TTTTCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAGTCACTTGAACTTCTTGA 60438
Query 33030 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 33089
| || ||||| | | ||| ||||| || || || || ||| |||||||| || ||
Sbjct 60439 CTGAAACGTTCCACAAGATTCTCATTTACAATACCATCTGAGGCAGCAAAAAAAGCTAAC 60498
Query 33090 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 33149
|| || || |||| | ||| || | | | ||||| | ||| | | ||| |
Sbjct 60499 ACGTGCGAAATGAAATGTCGTTCTTCAGATTTCAGTTTCTCCCAGTGTCGTAGATCATGG 60558
Query 33150 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 33209
| | |||||||| || |||||||| || || || || | || || | | |||
Sbjct 60559 GTGAGGTCCACTTCCTCGGTAGTCCAAAAGGAAGCTTCAGCTTCCTTGTATTTCTGCCAA 60618
Query 33210 ATGTCATGATATTGAATTGGAAAAATAACAAATCT 33244
|| || | ||| |||||| || | |||||||||
Sbjct 60619 ATATCTGGGAATTCAATTGGGAATAAAACAAATCT 60653
>seq820
Length=22770
Score = 156 bits (172), Expect = 5e-33
Identities = 247/351 (70%), Gaps = 6/351 (2%)
Strand=Plus/Minus
Query 62579 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62638
||||||| || |||||||||||||||||||||||||| || |||| |||||||| | |
Sbjct 21554 CCTTGAATTCCTATACCGATAGGTCTATGTCTCTTATTGGAATTTTCTGCTTCTGGTAGA 21495
Query 62639 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62698
|| ||||| || ||||| ||||| ||||| | ||||| | || ||| | ||
Sbjct 21494 GGGTAATAGTTTATATCGATAATCTTATTCAAGTTTCTAGTCACTATTTTAGTGATATTT 21435
Query 62699 TTCAGTTTGAGAAAATCAAATCGC---CCATCT--ATT-ACAAACATGTTCAATGCAACA 62752
|| ||||| ||||||||| | | | |||| ||| ||||||||||||| | |
Sbjct 21434 TTGAGTTTTTCAAAATCAAAACTCTTTCTATCTGCATTAACAAACATGTTCACAGGTATT 21375
Query 62753 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62812
|| ||||||||||| || || | || | | || |||| || || |||| |||
Sbjct 21374 GAAGCCAGATTACAGACAGCAATTTCGTCGGGCGACGTGTATTCTACGATTTCAGAACAA 21315
Query 62813 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 62872
|| ||||| | || || ||| || || | ||||||| ||| | || || || ||
Sbjct 21314 AGGTTACTGCCTTTTATCACTCCCAAGTTCTTTTGATTAGATTTTCTATTGCAAGCGTCT 21255
Query 62873 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 62923
|| ||||| || | |||||||||||||| | ||||| || ||| |||
Sbjct 21254 TTGTAAAGCATATAAGGAGTACCAGTTTCTACTTGAGAAGTTACAATGGCT 21204
Score = 127 bits (140), Expect = 3e-24
Identities = 280/420 (67%), Gaps = 0/420 (0%)
Strand=Plus/Minus
Query 63149 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63208
||||| |||| | || | | || ||| | |||||| |||||||| || || || | |
Sbjct 19999 TTTTTGAGATTCAAAAAGTCAAAAACATCCGCATGCCATGGTTCCAAATAAATAGCGAAA 19940
Query 63209 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63268
||||||| | ||| || || |||||||| | ||| | || || |||||| | ||| |
Sbjct 19939 GCTCCAGGTCTTTTATTACCACCCTGATCCACATATTTGGCAGTATTATTAAACACTTTA 19880
Query 63269 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCA 63328
| ||| |||| | ||||||||| || ||||| || || | ||||| | || ||
Sbjct 19879 AGCATAGGAACGAGACCATTGGAAGTGCCATTTGTGCCAGCAATATAAGTGCCTTGTGCT 19820
Query 63329 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63388
| ||||||| || || ||| ||||| ||||| |||| || || | || ||| |
Sbjct 19819 CTAATATTATGAACATTTACACCAATTCCTCCTGCATTTTTTGAAATGATAGCACATTGA 19760
Query 63389 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448
| | | || || ||||| | |||||| || ||| | || | ||||| |
Sbjct 19759 GTGAGACACTTGTAAATTCCCTCAAGACTATCCTCAGGCATCATTAGCAAGAAACAAGAA 19700
Query 63449 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCAT 63508
|||| ||| | | || | ||||||||||| |||||| || || || || ||
Sbjct 19699 GACAATTGTGGTCTTGGTGTAGCTGCATTAAATAACGTAGGACTGGCATGCGTGAAATAT 19640
Query 63509 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCT 63568
|||| || || |||||| || |||||||| | || || ||| | |||||| |||
Sbjct 19639 TTTTGTGATAGATAATTGTAAGTTTCAATAGCGGCCTCAATGTCCTCTCCATGAATGCCT 19580
Score = 111 bits (122), Expect = 2e-19
Identities = 115/151 (76%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63625
|||| ||| || | ||| | ||| || ||||||||||| || || ||| || |||||
Sbjct 19526 CCTATTGCTACTCTCATAAGCATATGTTGAGGTCTTTCGACAATTTTGCCATTAATTTTT 19467
Query 63626 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63685
|| || || || |||||| |||||||||||||||||||||||| ||||| |||| ||
Sbjct 19466 AATAAATAAGACCTTTCCAGAGTTTTAAAACCAAAATAGTTGTAAGAAAAATCTCTGTCA 19407
Query 63686 TAAATAATAACCGAGTTGAGTTTATCCTTAT 63716
|| |||||| || || ||| |||||||
Sbjct 19406 TAGATAATATTGGAATTTAGTCGGTCCTTAT 19376
Score = 104 bits (114), Expect = 3e-17
Identities = 137/188 (73%), Gaps = 4/188 (2%)
Strand=Plus/Minus
Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251
|| || ||||| || || | ||||| ||||||||||| ||||| || || ||||| | |
Sbjct 22051 ACCTGGAATTCGCCTGAAAGCACTCTACGAGTGTAAATGTTACTAGTGTAGGGTTCAATA 21992
Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311
|||||| || || ||||||||||||||||| || || |||||||| |||| | ||
Sbjct 21991 CTCTCATTGTTGCCTAAAATTTGAGCAGTTGAAGCTGTAGGCATAGGAGCCAATAGCAAG 21932
Query 62312 CTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGAT 62369
||||| | || ||||| | ||||| |||| | | ||||||| ||| | ||
Sbjct 21931 GAGTTTCTTAATCC--ATGTTTGGCAATTTTTACTTTCAATGCATCCCAATCCCATAAAT 21874
Query 62370 CCGACGGT 62377
| ||||||
Sbjct 21873 CTGACGGT 21866
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633506097321600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |