Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq4409 143 2e-29
seq4438 120 3e-22
seq2259 111 1e-19
seq1411 98.7 9e-16
>seq4409
Length=33873
Score = 143 bits (158), Expect = 2e-29
Identities = 172/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|||||||| || || |||||||| || || || || ||||||| | || || || ||
Sbjct 17754 ACAATGCAGATTTTCGTAAAGACCTTAACGGGCAAGACCATCACTCTTGAGGTCGAACCG 17813
Query 25056 TCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| |||||||| || | ||| |||||| ||| ||||| ||||| ||||| || ||
Sbjct 17814 TCGGACACTATTGAAAATGTAAAGGCAAAAATTCAG-GACAAGGAAGGAATTCCGCCAGA 17872
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| ||| | | || || |||||||||||| | ||||| | || ||| || ||||||
Sbjct 17873 CCAGCAGAGATTGATCTTCGCCGGCAAACAACTGGAAGACGGACGGACTTTGTCCGATTA 17932
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||||||||||| ||||| || ||||||| ||||| | || ||||| ||
Sbjct 17933 TAATATTCAAAAGGAATCTACCTTACATTTGGTGCTTCGACTGAGAGGTGG 17983
>seq4438
Length=69644
Score = 120 bits (132), Expect = 3e-22
Identities = 190/269 (71%), Gaps = 4/269 (1%)
Strand=Plus/Minus
Query 51015 CATATACCTGATTCTGCCAAAAATTTTGCGTTCTTTG-AACGGCCTG-TCGTGCACACCG 51072
|||||| | ||| | ||||||||||| || ||||| ||| | || ||||| |||||
Sbjct 7050 CATATAACGTATTTTTCCAAAAATTTTTCGCTCTTTCCAAC--CTTGATCGTGGACACCA 6993
Query 51073 CAAATTGACCACATACAACCCACATAATTGTTAGGATCGCGACCATCCACGCTGTAATGA 51132
||||| |||||||| || ||| | ||| |||||| ||||||| ||| |
Sbjct 6992 CAAATCGACCACATCACTCCAACAAATCCGTTCGGATCGTTTCCATCCAAAGCGTATACA 6933
Query 51133 TCGTTTAGAAATATGGCATAACCCAATGCCATGTCTGCACTAGGCGTCCATTCCATAATT 51192
|| ||||| | | ||| | || || |||||| ||| ||||||||||| ||||
Sbjct 6932 TCATTTAGCCACAATGCAATTTCTAAAGCTTTGTCTGGACTTTCCGTCCATTCCAGAATT 6873
Query 51193 TTCTTGGCCCAGTACATGCGCATGTAACCGTGCATCTTGCCCTCGCAACGAAGCTGCGCT 51252
|| || ||||||||| |||||||| || || || || || ||| ||| ||||| |
Sbjct 6872 TTTTTACACCAGTACATACGCATGTACCCATGTATTTTACCTTCGACACGGAGCTGTTTT 6813
Query 51253 TGAGCCGAGTTCCACAATTCGTCGTGAGT 51281
||||||| ||||| | | |||||| ||
Sbjct 6812 TGAGCCGCATTCCAAATTAAGTCGTGTGT 6784
>seq2259
Length=79244
Score = 111 bits (122), Expect = 1e-19
Identities = 169/238 (71%), Gaps = 2/238 (1%)
Strand=Plus/Minus
Query 24989 AAACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGT 25048
||||| || |||||||| || || || ||| | || ||||| ||||||| | || ||
Sbjct 78298 AAACGCCACGATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGT 78239
Query 25049 GGAGTCGTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTC 25107
|| | || ||||| || || | ||| | |||| ||| ||||||||||| || |
Sbjct 78238 CGAACCATCCGACACCATTGAAAATGTAAAGGCGAAAATTCAG-GACAAAGAAGGTATCC 78180
Query 25108 CACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGG 25167
| || |||||||| || | || ||||| || |||||| | || |||| |||||| |
Sbjct 78179 CCCCAGACCAACAACGTTTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGCACCCTCT 78120
Query 25168 GCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||| || ||||| ||||| || ||||| || || || || || || | ||||| ||
Sbjct 78119 CCGACTATAATATCCAAAAGGAGTCCACCCTGCACTTGGTACTCAGATTGAGAGGTGG 78062
>seq1411
Length=135556
Score = 98.7 bits (108), Expect = 9e-16
Identities = 139/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || || || || || | || |||||| |||||||| | ||||| || | ||
Sbjct 105699 AATGCAGATTTTCGTGAAAACCCTTACTGGTAAAACCATCACATTGGAAGTTGAACCTTC 105758
Query 25058 TGACACTATCGAGTCACTG-AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||||||||| || ||||||| | ||| ||||| |||||||| || || ||||
Sbjct 105759 CGACACTATCGAAAACGTGAAAGCAAAGATTCA-GGACAAGGAAGGGATCCCCCCAGACC 105817
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
|||| || | || || || || ||||| | ||||| | ||||| | || ||||
Sbjct 105818 AACAACGTCTCATCTTCGCTGGTAAACAGCTTGAAGACGGCCGCACCCTATCAGACTACA 105877
Query 25177 ATATTCAAAAAGA 25189
| || ||||||||
Sbjct 105878 ACATACAAAAAGA 105890
Score = 89.7 bits (98), Expect = 4e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 25094 CAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGA 25153
||| ||||| ||||| || ||||||||| | | ||||||||||| ||||||||||||||
Sbjct 108457 CAAGGAAGGTATTCCTCCAGACCAACAGAGATTGATTTTTGCCGGAAAACAATTAGAAGA 108516
Query 25154 TGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAG 25213
|| || || | || ||||| ||||| || || || || | || || || || ||
Sbjct 108517 TGGACGTACCCTTTCTGACTACAACATTCAGAAGGAGTCAACATTGCACTTGGTTCTGAG 108576
Query 25214 GCTAAGAGGAGGAA 25227
||||||| ||||
Sbjct 108577 ATTAAGAGGCGGAA 108590
Score = 87.8 bits (96), Expect = 2e-12
Identities = 113/155 (73%), Gaps = 1/155 (1%)
Strand=Plus/Plus
Query 25077 AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCC 25136
|||| |||| ||| ||||||||||| ||||| || || || ||| || | || || ||
Sbjct 108667 AAGCCAAAATTCAA-GACAAAGAAGGAATTCCTCCAGATCAGCAGAGGTTGATCTTCGCT 108725
Query 25137 GGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACG 25196
|| |||||| | ||||||| || ||| | || ||||| || ||||| || |||||
Sbjct 108726 GGAAAACAACTTGAAGATGGACGTACTCTCTCTGACTACAACATCCAAAAGGAGTCCACC 108785
Query 25197 CTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231
||||||| ||||| | || | || ||||| ||
Sbjct 108786 TTACATTTGGTGCTCCGTCTTCGTGGTGGAAACTA 108820
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433244050283240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |