Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4409 143 2e-29 seq4438 120 3e-22 seq2259 111 1e-19 seq1411 98.7 9e-16 >seq4409 Length=33873 Score = 143 bits (158), Expect = 2e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| || || |||||||| || || || || ||||||| | || || || || Sbjct 17754 ACAATGCAGATTTTCGTAAAGACCTTAACGGGCAAGACCATCACTCTTGAGGTCGAACCG 17813 Query 25056 TCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || |||||||| || | ||| |||||| ||| ||||| ||||| ||||| || || Sbjct 17814 TCGGACACTATTGAAAATGTAAAGGCAAAAATTCAG-GACAAGGAAGGAATTCCGCCAGA 17872 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| | | || || |||||||||||| | ||||| | || ||| || |||||| Sbjct 17873 CCAGCAGAGATTGATCTTCGCCGGCAAACAACTGGAAGACGGACGGACTTTGTCCGATTA 17932 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||| ||||| || ||||||| ||||| | || ||||| || Sbjct 17933 TAATATTCAAAAGGAATCTACCTTACATTTGGTGCTTCGACTGAGAGGTGG 17983 >seq4438 Length=69644 Score = 120 bits (132), Expect = 3e-22 Identities = 190/269 (71%), Gaps = 4/269 (1%) Strand=Plus/Minus Query 51015 CATATACCTGATTCTGCCAAAAATTTTGCGTTCTTTG-AACGGCCTG-TCGTGCACACCG 51072 |||||| | ||| | ||||||||||| || ||||| ||| | || ||||| ||||| Sbjct 7050 CATATAACGTATTTTTCCAAAAATTTTTCGCTCTTTCCAAC--CTTGATCGTGGACACCA 6993 Query 51073 CAAATTGACCACATACAACCCACATAATTGTTAGGATCGCGACCATCCACGCTGTAATGA 51132 ||||| |||||||| || ||| | ||| |||||| ||||||| ||| | Sbjct 6992 CAAATCGACCACATCACTCCAACAAATCCGTTCGGATCGTTTCCATCCAAAGCGTATACA 6933 Query 51133 TCGTTTAGAAATATGGCATAACCCAATGCCATGTCTGCACTAGGCGTCCATTCCATAATT 51192 || ||||| | | ||| | || || |||||| ||| ||||||||||| |||| Sbjct 6932 TCATTTAGCCACAATGCAATTTCTAAAGCTTTGTCTGGACTTTCCGTCCATTCCAGAATT 6873 Query 51193 TTCTTGGCCCAGTACATGCGCATGTAACCGTGCATCTTGCCCTCGCAACGAAGCTGCGCT 51252 || || ||||||||| |||||||| || || || || || ||| ||| ||||| | Sbjct 6872 TTTTTACACCAGTACATACGCATGTACCCATGTATTTTACCTTCGACACGGAGCTGTTTT 6813 Query 51253 TGAGCCGAGTTCCACAATTCGTCGTGAGT 51281 ||||||| ||||| | | |||||| || Sbjct 6812 TGAGCCGCATTCCAAATTAAGTCGTGTGT 6784 >seq2259 Length=79244 Score = 111 bits (122), Expect = 1e-19 Identities = 169/238 (71%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 24989 AAACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGT 25048 ||||| || |||||||| || || || ||| | || ||||| ||||||| | || || Sbjct 78298 AAACGCCACGATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGT 78239 Query 25049 GGAGTCGTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTC 25107 || | || ||||| || || | ||| | |||| ||| ||||||||||| || | Sbjct 78238 CGAACCATCCGACACCATTGAAAATGTAAAGGCGAAAATTCAG-GACAAAGAAGGTATCC 78180 Query 25108 CACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGG 25167 | || |||||||| || | || ||||| || |||||| | || |||| |||||| | Sbjct 78179 CCCCAGACCAACAACGTTTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGCACCCTCT 78120 Query 25168 GCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || ||||| ||||| || ||||| || || || || || || | ||||| || Sbjct 78119 CCGACTATAATATCCAAAAGGAGTCCACCCTGCACTTGGTACTCAGATTGAGAGGTGG 78062 >seq1411 Length=135556 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || || | || |||||| |||||||| | ||||| || | || Sbjct 105699 AATGCAGATTTTCGTGAAAACCCTTACTGGTAAAACCATCACATTGGAAGTTGAACCTTC 105758 Query 25058 TGACACTATCGAGTCACTG-AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||||||||| || ||||||| | ||| ||||| |||||||| || || |||| Sbjct 105759 CGACACTATCGAAAACGTGAAAGCAAAGATTCA-GGACAAGGAAGGGATCCCCCCAGACC 105817 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || || || || ||||| | ||||| | ||||| | || |||| Sbjct 105818 AACAACGTCTCATCTTCGCTGGTAAACAGCTTGAAGACGGCCGCACCCTATCAGACTACA 105877 Query 25177 ATATTCAAAAAGA 25189 | || |||||||| Sbjct 105878 ACATACAAAAAGA 105890 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25094 CAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGA 25153 ||| ||||| ||||| || ||||||||| | | ||||||||||| |||||||||||||| Sbjct 108457 CAAGGAAGGTATTCCTCCAGACCAACAGAGATTGATTTTTGCCGGAAAACAATTAGAAGA 108516 Query 25154 TGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAG 25213 || || || | || ||||| ||||| || || || || | || || || || || Sbjct 108517 TGGACGTACCCTTTCTGACTACAACATTCAGAAGGAGTCAACATTGCACTTGGTTCTGAG 108576 Query 25214 GCTAAGAGGAGGAA 25227 ||||||| |||| Sbjct 108577 ATTAAGAGGCGGAA 108590 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/155 (73%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 25077 AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCC 25136 |||| |||| ||| ||||||||||| ||||| || || || ||| || | || || || Sbjct 108667 AAGCCAAAATTCAA-GACAAAGAAGGAATTCCTCCAGATCAGCAGAGGTTGATCTTCGCT 108725 Query 25137 GGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACG 25196 || |||||| | ||||||| || ||| | || ||||| || ||||| || ||||| Sbjct 108726 GGAAAACAACTTGAAGATGGACGTACTCTCTCTGACTACAACATCCAAAAGGAGTCCACC 108785 Query 25197 CTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 ||||||| ||||| | || | || ||||| || Sbjct 108786 TTACATTTGGTGCTCCGTCTTCGTGGTGGAAACTA 108820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433244050283240