Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2028 379 2e-100 >seq2028 Length=154558 Score = 379 bits (420), Expect = 2e-100 Identities = 568/804 (71%), Gaps = 2/804 (0%) Strand=Plus/Plus Query 92918 AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 || || | |||||||||||||||||| |||||| ||||||| | ||||||||||| | Sbjct 59893 AACAAACGATCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCATTCCAATC 59952 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 |||| || || | ||| || | |||||| |||| || ||| ||| || ||| ||| Sbjct 59953 AGACTGACTGGCAAAGCCTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCTG-CAAT 60011 Query 93038 ATTTCTA-TTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096 | | || ||||||| | || |||||| || | || | | | |||||| || Sbjct 60012 AATACTGGTTACTCTTTCTTGTGATGGTTTCTGATGCAGATGTGAGAATAGTAAGCATGC 60071 Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGG 93156 ||| || ||||| |||||| |||| |||||||| ||||| ||||||||||| || Sbjct 60072 AAAATCACAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTAAACCGGG 60131 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | || || |||||||| | ||| || || | ||||| |||||| ||||| || || Sbjct 60132 CATAAGACCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAAAAAAATGCC 60191 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 ||| ||||| ||||| ||||| | | |||| | || | | || ||| ||||| Sbjct 60192 TTCAACGGCAGCAAAAGCCACCAATCTTTCGCCGAACGAGGATGTTTTCGAGCTAATCCA 60251 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 |||| |||||||| ||||| ||||||| ||| || | ||||| ||||||||||| | Sbjct 60252 CTTTAGGGCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGCGTTAAACAA 60311 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | | ||| || | | ||| | || || || || || | ||||||||||| Sbjct 60312 GAACTCTTTTTCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGTACATTTCAGA 60371 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 ||||| ||| || |||||||| |||||||| || ||||| | |||||| || | || || Sbjct 60372 ATGGATATTTTCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAGTCACTTGAAC 60431 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 ||||||| || | || || ||||| ||||| || |||||||| || || |||||||| Sbjct 60432 TTCTTGACTGAAACGTTCCACAAGATTCTCATTTACAATACCATCTGAGGCAGCAAAAAA 60491 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAG 93576 ||| || | ||| || |||||| || ||| ||| || || ||||| | ||| Sbjct 60492 AGCTAACACGTGCGAAATGAAATGTCGTTCTTCAGATTTCAGTTTCTCCCAGTGTCGTAG 60551 Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636 ||| | | || || ||||| ||| ||||||||| || ||||| |||| ||||| | Sbjct 60552 ATCATGGGTGAGGTCCACTTCCTCGGTAGTCCAAAAGGAAGCTTCAGCTTCCTTGTATTT 60611 Query 93637 ATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAG 93696 | ||| || ||| | ||| |||||| |||| ||||| | |||||| ||||| || Sbjct 60612 CTGCCAAATATCTGGGAATTCAATTGGGAATAAAACAAATCTTCGAGGGTTTTCTTTCAG 60671 Query 93697 TAACGGCTCTAGTTGTGGGTCAAA 93720 ||| || || | || || ||||| Sbjct 60672 TAAAGGTTCCAACTGAGGATCAAA 60695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556750151759040