Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq2259 140 3e-28
seq1411 120 3e-22
seq4409 113 4e-20
>seq2259
Length=79244
Score = 140 bits (154), Expect = 3e-28
Identities = 170/232 (73%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277
|||||||||||| || |||||| | || ||||| || |||| ||||| || ||| | |
Sbjct 78289 GATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAACCATC 78230
Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337
||| ||| | || || | || |||||||| ||||| || ||||| || || || ||
Sbjct 78229 CGACACCATTGAAAATGTAAAGGCGAAAATTCAGGACAAAGAAGGTATCCCCCCAGACCA 78170
Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397
||||||| | || ||||| || ||||| | |||||| |||||| ||||||| || ||
Sbjct 78169 ACAACGTTTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGCACCCTCTCCGACTATAA 78110
Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449
|| ||||| || |||||| | || || || | ||||| | || ||| ||
Sbjct 78109 TATCCAAAAGGAGTCCACCCTGCACTTGGTACTCAGATTGAGAGGTGGTATT 78058
>seq1411
Length=135556
Score = 120 bits (132), Expect = 3e-22
Identities = 154/211 (73%), Gaps = 1/211 (0%)
Strand=Plus/Plus
Query 22200 GTTTTATACATTTGTAAAGA-TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCA 22258
||| ||| |||| || ||| |||| ||||| || ||||| | || |||||||| |||
Sbjct 105680 GTTGTATTTATTTTTATAGAATGCAGATTTTCGTGAAAACCCTTACTGGTAAAACCATCA 105739
Query 22259 CTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGG 22318
| | ||||| ||| | |||| || | || | | ||| ||| ||||| |||||||
Sbjct 105740 CATTGGAAGTTGAACCTTCCGACACTATCGAAAACGTGAAAGCAAAGATTCAGGACAAGG 105799
Query 22319 AGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACC 22378
| || || || || || ||||||||||| || || || || |||||| | || || ||
Sbjct 105800 AAGGGATCCCCCCAGACCAACAACGTCTCATCTTCGCTGGTAAACAGCTTGAAGACGGCC 105859
Query 22379 GCACCGTCTCCGATTACAACATTCAAAAAGA 22409
||||| | || || |||||||| ||||||||
Sbjct 105860 GCACCCTATCAGACTACAACATACAAAAAGA 105890
Score = 84.2 bits (92), Expect = 2e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394
|||||||||| | || || || || ||||| || || ||| || ||| | || || ||
Sbjct 108224 TCAACAACGTTTAATCTTCGCTGGAAAACAATTGGAAGATGGTCGTACCCTTTCAGACTA 108283
Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
||| |||||||||||||||||| | || || ||||| ||||| | |||||
Sbjct 108284 CAATATTCAAAAAGAATCCACCCTCCACTTGGTTTTAAGATTGAGAGGAGG 108334
Score = 84.2 bits (92), Expect = 2e-11
Identities = 109/151 (72%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
||||||| | || || | ||| |||||||||||||| || || ||||| || ||||
Sbjct 108646 CCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGAATTCCTCCAGATC 108705
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
| || | | || || || || ||||| | || ||| || || |||| || ||||
Sbjct 108706 AGCAGAGGTTGATCTTCGCTGGAAAACAACTTGAAGATGGACGTACTCTCTCTGACTACA 108765
Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGT 22427
|||| ||||| || |||||| ||||||| ||
Sbjct 108766 ACATCCAAAAGGAGTCCACCTTACATTTGGT 108796
>seq4409
Length=33873
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || || || ||||| || || || |||||||||| || ||| | |
Sbjct 17757 ATGCAGATTTTCGTAAAGACCTTAACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 17816
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || || | || ||||||||| |||||||| || ||||| || || ||
Sbjct 17817 GACACTATTGAAAATGTAAAGGCAAAAATTCAGGACAAGGAAGGAATTCCGCCAGACCAG 17876
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | || || ||||||||||| | || || || || | |||||||| ||
Sbjct 17877 CAGAGATTGATCTTCGCCGGCAAACAACTGGAAGACGGACGGACTTTGTCCGATTATAAT 17936
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|||||||| ||||| ||| ||||||| || | ||| || | || ||
Sbjct 17937 ATTCAAAAGGAATCTACCTTACATTTGGTGCTTCGACTGAGAGGTGG 17983
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419646685045240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |