Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2259 140 3e-28 seq1411 120 3e-22 seq4409 113 4e-20 >seq2259 Length=79244 Score = 140 bits (154), Expect = 3e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||||||||| || |||||| | || ||||| || |||| ||||| || ||| | | Sbjct 78289 GATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAACCATC 78230 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | || || | || |||||||| ||||| || ||||| || || || || Sbjct 78229 CGACACCATTGAAAATGTAAAGGCGAAAATTCAGGACAAAGAAGGTATCCCCCCAGACCA 78170 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||||||| | || ||||| || ||||| | |||||| |||||| ||||||| || || Sbjct 78169 ACAACGTTTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGCACCCTCTCCGACTATAA 78110 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 || ||||| || |||||| | || || || | ||||| | || ||| || Sbjct 78109 TATCCAAAAGGAGTCCACCCTGCACTTGGTACTCAGATTGAGAGGTGGTATT 78058 >seq1411 Length=135556 Score = 120 bits (132), Expect = 3e-22 Identities = 154/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 22200 GTTTTATACATTTGTAAAGA-TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCA 22258 ||| ||| |||| || ||| |||| ||||| || ||||| | || |||||||| ||| Sbjct 105680 GTTGTATTTATTTTTATAGAATGCAGATTTTCGTGAAAACCCTTACTGGTAAAACCATCA 105739 Query 22259 CTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGG 22318 | | ||||| ||| | |||| || | || | | ||| ||| ||||| ||||||| Sbjct 105740 CATTGGAAGTTGAACCTTCCGACACTATCGAAAACGTGAAAGCAAAGATTCAGGACAAGG 105799 Query 22319 AGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACC 22378 | || || || || || ||||||||||| || || || || |||||| | || || || Sbjct 105800 AAGGGATCCCCCCAGACCAACAACGTCTCATCTTCGCTGGTAAACAGCTTGAAGACGGCC 105859 Query 22379 GCACCGTCTCCGATTACAACATTCAAAAAGA 22409 ||||| | || || |||||||| |||||||| Sbjct 105860 GCACCCTATCAGACTACAACATACAAAAAGA 105890 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 |||||||||| | || || || || ||||| || || ||| || ||| | || || || Sbjct 108224 TCAACAACGTTTAATCTTCGCTGGAAAACAATTGGAAGATGGTCGTACCCTTTCAGACTA 108283 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| |||||||||||||||||| | || || ||||| ||||| | ||||| Sbjct 108284 CAATATTCAAAAAGAATCCACCCTCCACTTGGTTTTAAGATTGAGAGGAGG 108334 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 ||||||| | || || | ||| |||||||||||||| || || ||||| || |||| Sbjct 108646 CCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGAATTCCTCCAGATC 108705 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | | || || || || ||||| | || ||| || || |||| || |||| Sbjct 108706 AGCAGAGGTTGATCTTCGCTGGAAAACAACTTGAAGATGGACGTACTCTCTCTGACTACA 108765 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGT 22427 |||| ||||| || |||||| ||||||| || Sbjct 108766 ACATCCAAAAGGAGTCCACCTTACATTTGGT 108796 >seq4409 Length=33873 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || ||||| || || || |||||||||| || ||| | | Sbjct 17757 ATGCAGATTTTCGTAAAGACCTTAACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 17816 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || ||||||||| |||||||| || ||||| || || || Sbjct 17817 GACACTATTGAAAATGTAAAGGCAAAAATTCAGGACAAGGAAGGAATTCCGCCAGACCAG 17876 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || ||||||||||| | || || || || | |||||||| || Sbjct 17877 CAGAGATTGATCTTCGCCGGCAAACAACTGGAAGACGGACGGACTTTGTCCGATTATAAT 17936 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| ||||| ||| ||||||| || | ||| || | || || Sbjct 17937 ATTCAAAAGGAATCTACCTTACATTTGGTGCTTCGACTGAGAGGTGG 17983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419646685045240