Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq1411 161 2e-34
seq4409 150 3e-31
>seq1411
Length=135556
Score = 161 bits (178), Expect = 2e-34
Identities = 151/192 (79%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 68271 TCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAAT 68330
|||||||| ||||| || || || || || | || ||||| | ||| || || |||||
Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831
Query 68331 ATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCC 68390
||||| | ||||||||| || || || ||||||||||| ||||||||||| || |||
Sbjct 105830 ATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACGTTT 105771
Query 68391 TCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACG 68450
||||| ||||| | | ||| |||||||| ||||||||||| || || ||||| || |||
Sbjct 105770 TCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCACG 105711
Query 68451 AATATCTGCATT 68462
|| |||||||||
Sbjct 105710 AAAATCTGCATT 105699
Score = 111 bits (122), Expect = 3e-19
Identities = 119/156 (76%), Gaps = 1/156 (1%)
Strand=Plus/Minus
Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287
||| ||||| || ||||| || | ||||| |||| |||||||| ||||||||||| ||
Sbjct 108821 TTAGTTTCCACCACGAAGACGGAGCACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTA 108762
Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347
|| ||||| || | |||||||| | || || || ||||| || | || || || ||
Sbjct 108761 GTCAGAGAGAGTACGTCCATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTCTGCTGATC 108702
Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTT 68383
|| ||||| ||||| ||||||||||| |||| |||
Sbjct 108701 TGGAGGAATTCCTTCTTTGTCTTGAAT-TTTGGCTT 108667
Score = 89.7 bits (98), Expect = 9e-13
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||||||| | || ||||| || || ||||| || || || || || | |||||||||
Sbjct 108570 ACCAAGTGCAATGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGTCCATCTTCT 108511
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366
|| || || ||||| || || | ||| |||||||| || ||||| |||||||||
Sbjct 108510 AATTGTTTTCCGGCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTTG 108457
>seq4409
Length=33873
Score = 150 bits (166), Expect = 3e-31
Identities = 161/213 (76%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
||||| |||| || || || ||||| || ||||||||||| | |||| || |||||
Sbjct 17965 ACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGACAAAGTCCGTCCGTCTTCC 17906
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| || || |||||||| || | ||| || ||||| || ||||| ||||||||||| |||
Sbjct 17905 AGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGGAATTCCTTCCTTGTCCTGA 17846
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
|| |||||||| || || || ||||| | | ||| || || | |||||||| ||
Sbjct 17845 ATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTTG 17786
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
||||| | |||||| ||||| ||||||||| ||
Sbjct 17785 CCCGTTAAGGTCTTTACGAAAATCTGCATTGTG 17753
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921439273629120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |