Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1411 161 2e-34 seq4409 150 3e-31 >seq1411 Length=135556 Score = 161 bits (178), Expect = 2e-34 Identities = 151/192 (79%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 68271 TCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAAT 68330 |||||||| ||||| || || || || || | || ||||| | ||| || || ||||| Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831 Query 68331 ATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCC 68390 ||||| | ||||||||| || || || ||||||||||| ||||||||||| || ||| Sbjct 105830 ATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACGTTT 105771 Query 68391 TCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACG 68450 ||||| ||||| | | ||| |||||||| ||||||||||| || || ||||| || ||| Sbjct 105770 TCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCACG 105711 Query 68451 AATATCTGCATT 68462 || ||||||||| Sbjct 105710 AAAATCTGCATT 105699 Score = 111 bits (122), Expect = 3e-19 Identities = 119/156 (76%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 ||| ||||| || ||||| || | ||||| |||| |||||||| ||||||||||| || Sbjct 108821 TTAGTTTCCACCACGAAGACGGAGCACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTA 108762 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 || ||||| || | |||||||| | || || || ||||| || | || || || || Sbjct 108761 GTCAGAGAGAGTACGTCCATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTCTGCTGATC 108702 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTT 68383 || ||||| ||||| ||||||||||| |||| ||| Sbjct 108701 TGGAGGAATTCCTTCTTTGTCTTGAAT-TTTGGCTT 108667 Score = 89.7 bits (98), Expect = 9e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| | || ||||| || || ||||| || || || || || | ||||||||| Sbjct 108570 ACCAAGTGCAATGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGTCCATCTTCT 108511 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 || || || ||||| || || | ||| |||||||| || ||||| ||||||||| Sbjct 108510 AATTGTTTTCCGGCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTTG 108457 >seq4409 Length=33873 Score = 150 bits (166), Expect = 3e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| |||| || || || ||||| || ||||||||||| | |||| || ||||| Sbjct 17965 ACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGACAAAGTCCGTCCGTCTTCC 17906 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | || || |||||||| || | ||| || ||||| || ||||| ||||||||||| ||| Sbjct 17905 AGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGGAATTCCTTCCTTGTCCTGA 17846 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || |||||||| || || || ||||| | | ||| || || | |||||||| || Sbjct 17845 ATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTTG 17786 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 ||||| | |||||| ||||| ||||||||| || Sbjct 17785 CCCGTTAAGGTCTTTACGAAAATCTGCATTGTG 17753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921439273629120