Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1411 127 2e-24 seq4409 120 3e-22 seq2259 114 1e-20 >seq1411 Length=135556 Score = 127 bits (140), Expect = 2e-24 Identities = 145/193 (75%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAG--TACGAGAATCTTCAAGTTGTTTACCAGCGT 114249 |||||||| |||||||| || | |||| | || |||||||| |||||||||||| Sbjct 105890 TCTTTTTGTATGTTGTAGTC--TGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGA 105833 Query 114250 AGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCT 114309 |||||||||| |||||||| || || || ||||| ||||| ||||||| ||| | | Sbjct 105832 AGATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACGT 105773 Query 114310 GTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 114369 ||| | ||||||| | ||| || |||| || | ||||| || || || ||||| | Sbjct 105772 TTTCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCA 105713 Query 114370 CAAAAATCTGCAT 114382 | ||||||||||| Sbjct 105712 CGAAAATCTGCAT 105700 Score = 98.7 bits (108), Expect = 8e-16 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | | || ||||||| || || || ||||| |||||||| || Sbjct 108814 CCACCACGAAGACGGAGCACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAG 108755 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | |||||| ||||||||||||||| |||||| |||| | | ||| || || |||||| Sbjct 108754 AGAGTACGTCCATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGGA 108695 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGG 114324 || ||||||||||| ||| || ||||| | ||||| || |||| Sbjct 108694 ATTCCTTCTTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGG 108646 >seq4409 Length=33873 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||||| |||||||| |||||||| || |||||| || ||| || ||||| Sbjct 17965 ACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGACAAAGTCCGTCCGTCTTCC 17906 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 |||||||| || ||| |||| | | ||| ||||| || ||||| ||||| ||||| | Sbjct 17905 AGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGGAATTCCTTCCTTGTCCTGA 17846 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 || ||| |||| | ||||| ||||| | | |||||| || | || | || ||| Sbjct 17845 ATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTTG 17786 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || ||||| ||||||||||| Sbjct 17785 CCCGTTAAGGTCTTTACGAAAATCTGCAT 17757 >seq2259 Length=79244 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114152 AATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211 |||||| || | | ||| | || || || | || || || ||||| || || || || Sbjct 78058 AATACCACCTCTCAATCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTC 78117 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 | | || ||| ||| || |||||||||||||| |||| | ||| |||||||| || Sbjct 78118 GGAGAGGGTGCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGG 78177 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 || || ||||||||||| ||| || |||| | ||||| |||||||| | ||| Sbjct 78178 GGGGATACCTTCTTTGTCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTC 78237 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || | ||| | || || || || |||||||| || ||||| ||||| Sbjct 78238 GACCTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420053006312352