Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq1411 127 2e-24
seq4409 120 3e-22
seq2259 114 1e-20
>seq1411
Length=135556
Score = 127 bits (140), Expect = 2e-24
Identities = 145/193 (75%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAG--TACGAGAATCTTCAAGTTGTTTACCAGCGT 114249
|||||||| |||||||| || | |||| | || |||||||| ||||||||||||
Sbjct 105890 TCTTTTTGTATGTTGTAGTC--TGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGA 105833
Query 114250 AGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCT 114309
|||||||||| |||||||| || || || ||||| ||||| ||||||| ||| | |
Sbjct 105832 AGATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACGT 105773
Query 114310 GTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 114369
||| | ||||||| | ||| || |||| || | ||||| || || || ||||| |
Sbjct 105772 TTTCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCA 105713
Query 114370 CAAAAATCTGCAT 114382
| |||||||||||
Sbjct 105712 CGAAAATCTGCAT 105700
Score = 98.7 bits (108), Expect = 8e-16
Identities = 123/169 (73%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215
|| ||||| || | | || ||||||| || || || ||||| |||||||| ||
Sbjct 108814 CCACCACGAAGACGGAGCACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAG 108755
Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275
| |||||| ||||||||||||||| |||||| |||| | | ||| || || ||||||
Sbjct 108754 AGAGTACGTCCATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGGA 108695
Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGG 114324
|| ||||||||||| ||| || ||||| | ||||| || ||||
Sbjct 108694 ATTCCTTCTTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGG 108646
>seq4409
Length=33873
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233
|| ||||||| |||||||| |||||||| || |||||| || ||| || |||||
Sbjct 17965 ACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGACAAAGTCCGTCCGTCTTCC 17906
Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293
|||||||| || ||| |||| | | ||| ||||| || ||||| ||||| ||||| |
Sbjct 17905 AGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGGAATTCCTTCCTTGTCCTGA 17846
Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353
|| ||| |||| | ||||| ||||| | | |||||| || | || | || |||
Sbjct 17845 ATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTTG 17786
Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || ||||| |||||||||||
Sbjct 17785 CCCGTTAAGGTCTTTACGAAAATCTGCAT 17757
>seq2259
Length=79244
Score = 114 bits (126), Expect = 1e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 114152 AATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211
|||||| || | | ||| | || || || | || || || ||||| || || || ||
Sbjct 78058 AATACCACCTCTCAATCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTC 78117
Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271
| | || ||| ||| || |||||||||||||| |||| | ||| |||||||| ||
Sbjct 78118 GGAGAGGGTGCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGG 78177
Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331
|| || ||||||||||| ||| || |||| | ||||| |||||||| | |||
Sbjct 78178 GGGGATACCTTCTTTGTCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTC 78237
Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
||| || | ||| | || || || || |||||||| || ||||| |||||
Sbjct 78238 GACCTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420053006312352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |