Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq173 170 2e-37 >seq173 Length=58411 Score = 170 bits (188), Expect = 2e-37 Identities = 247/344 (72%), Gaps = 6/344 (2%) Strand=Plus/Plus Query 20243 GTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCC 20302 ||||||||||| | |||||||||||| | | |||||| ||||| |||||||||||||| Sbjct 29205 GTAACATGAGCTATCATATAAGTTAACAAAGCATAGCTAGCAATATTAAAAGGAACTCCA 29264 Query 20303 AAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAA 20362 | ||||| || | || |||||||| | ||||||||| | ||||| | || |||||| Sbjct 29265 AGTCCCATATCAGCTGATCTCTGATATAACTGACAGGATAATTCACCATTGGCCACATAA 29324 Query 20363 AATTG-ACATAACAAGTGACAGGGCGGAAGCGCCA--TCAACGACAAGTCCGCCGGGTTC 20419 || || || ||||| || || ||||| || |||| ||| || | |||| || ||| Sbjct 29325 AACTGCACTAAACAA-TGGCAAGGCGGTAGAGCCATTTCAGGGAGA--TCCGTAGGATTC 29381 Query 20420 CACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTAC 20479 || ||||||||||| ||||||||||| | |||| |||| || || | | | Sbjct 29382 CATGCACACATAATCATTCTTCTATCTGTTGAATTAGTTTTGATGGTATTGATTACCTGT 29441 Query 20480 GACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCA 20539 | |||||| |||| || | |||||| | | || | || ||| | || ||| Sbjct 29442 GCCAATTGATCAATGCCTTTATTTGTATAATTCGAATGCATTCCCTTGTATTCAGCACCA 29501 Query 20540 AAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTC 20583 |||| | ||| |||||||| || | ||||||||||| ||||| Sbjct 29502 TAGTGACGCCATTGGAAACCATATATTGGTCCCAAATCGCCCTC 29545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441285099224640