Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq2259 141 2e-28
seq1411 132 1e-25
seq4409 131 4e-25
seq4656 91.5 3e-13
>seq2259
Length=79244
Score = 141 bits (156), Expect = 2e-28
Identities = 170/230 (74%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | | ||| ||||| | || | ||| || ||||||||||||||||||| |
Sbjct 78062 CCACCTCTCAATCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCGGAG 78121
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363
|| ||||| || || || | |||||| || || ||||||| ||| ||||| |||
Sbjct 78122 AGGGTGCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTG---GTCTGGG 78178
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||| |||||||| ||||| |||||||| || || ||||| || | ||| | |||
Sbjct 78179 GGGATACCTTCTTTGTCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCG 78238
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || ||||| ||||| || || ||||| || ||||| || |||||
Sbjct 78239 ACCTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288
>seq1411
Length=135556
Score = 132 bits (146), Expect = 1e-25
Identities = 147/195 (75%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|||||||| || || ||||| | || ||||| |||||||| | ||||| || ||||||
Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|| ||||| ||||| |||||| || ||||| || ||||| || || |||||||||
Sbjct 105830 ATGAGACGTTGTTGG---TCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACG 105774
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
||||| |||| ||| | ||| ||||| | ||||| || || || || || || ||
Sbjct 105773 TTTTCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTC 105714
Query 288460 ACGAATATCTGCATT 288474
||||| |||||||||
Sbjct 105713 ACGAAAATCTGCATT 105699
Score = 109 bits (120), Expect = 1e-18
Identities = 128/172 (74%), Gaps = 6/172 (3%)
Strand=Plus/Minus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| || || | || || | ||| | ||| || |||||||| || ||||| |
Sbjct 108815 TCCACCACGAAGACGGAGCACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGA 108756
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
||| || ||||| ||||| | ||||||||| |||||||||| | ||| ||| |||||
Sbjct 108755 GAGAGTACGTCCATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTCTGCTGA---TCTGG 108699
Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG 288414
||||||||||| || || ||||| ||||| || ||||| |||| ||||
Sbjct 108698 AGGAATTCCTTCTTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCG 108647
>seq4409
Length=33873
Score = 131 bits (144), Expect = 4e-25
Identities = 170/234 (73%), Gaps = 6/234 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | |||| ||| || | ||| | || ||| ||||| |||||||| ||||
Sbjct 17983 CCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGAC 17924
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363
| || ||||||||||| | |||||| || |||||||||| | ||| || |||
Sbjct 17923 AAAGTCCGTCCGTCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTG---GTCTGGC 17867
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| |||||||| || ||||| ||||| || || || ||||| |||| || || |||
Sbjct 17866 GGAATTCCTTCCTTGTCCTGAATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCG 17807
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
|| || || ||||| ||||| || || | ||||| ||||| ||||||||| ||
Sbjct 17806 ACCTCAAGAGTGATGGTCTTGCCCGTTAAGGTCTTTACGAAAATCTGCATTGTG 17753
>seq4656
Length=6745
Score = 91.5 bits (100), Expect = 3e-13
Identities = 243/369 (66%), Gaps = 2/369 (1%)
Strand=Plus/Plus
Query 325127 TCTTTAGGGTTGTAACTGGGAATGTTCGTCGACCATCCGGTTCCGATACCACTCGATCCA 325186
||| | || ||||| | || || || ||| ||| || ||||| |||||| | |||
Sbjct 5394 TCTCTGGGATTGTAGTTAGGTATTTTAGTCATCCACCCAGTTCCAATACCATCAGCACCA 5453
Query 325187 TTCACCAGGATACTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTATCGCCGTCG 325246
|| ||||| | ||||||||| || | ||| | | ||||| || || | ||
Sbjct 5454 TTTACCAGAACCATCGGAATAATGGGTATATACCAAACGGGTTCAATTTTCTGATTATCA 5513
Query 325247 TCGTACATATATTTCAGAAGATTGTCGTCCGTATCGACGAAA-ACCTGTCGAGTCTGAGG 325305
|| || || | | ||||| ||| || || | || |||| | | || ||| | ||
Sbjct 5514 TCATATTCATGTGTTAGAAGGGCGTCATC-GTTTGGATGAAATATCAAACGTGTCAGTGG 5572
Query 325306 GTTCAGTTTCatatatatatatCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGA 325365
|| ||| || | ||||||| ||||| || ||||| || ||| || | |
Sbjct 5573 AGACATTTTTGTAAAAATATATCTCGCACTTGCAGAGTCCTTTCCGCCCATTAAACGGGT 5632
Query 325366 ACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGC 325425
||| || || || || ||| | || || ||||||||||||||| ||| || ||
Sbjct 5633 ACCAAATTGACCACGTGGTTCCAATAAATTAATATTATTGCTTCCGACAAAATTTTGAGC 5692
Query 325426 AAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGC 325485
||| |||||||||||| | |||||| |||| || || |||||||| ||| || ||
Sbjct 5693 AAGATTCACGATGGTCGCACAGAGAGATACTTCACCGTGATGATAGGCCGAATGTTCAGC 5752
Query 325486 AACGTAACC 325494
|| ||||
Sbjct 5753 TACTGAACC 5761
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179414142737488
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |