Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2259 141 2e-28 seq1411 132 1e-25 seq4409 131 4e-25 seq4656 91.5 3e-13 >seq2259 Length=79244 Score = 141 bits (156), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | | ||| ||||| | || | ||| || ||||||||||||||||||| | Sbjct 78062 CCACCTCTCAATCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCGGAG 78121 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || ||||| || || || | |||||| || || ||||||| ||| ||||| ||| Sbjct 78122 AGGGTGCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTG---GTCTGGG 78178 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| |||||||| ||||| |||||||| || || ||||| || | ||| | ||| Sbjct 78179 GGGATACCTTCTTTGTCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCG 78238 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || || ||||| || ||||| || ||||| Sbjct 78239 ACCTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288 >seq1411 Length=135556 Score = 132 bits (146), Expect = 1e-25 Identities = 147/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| || || ||||| | || ||||| |||||||| | ||||| || |||||| Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| ||||| |||||| || ||||| || ||||| || || ||||||||| Sbjct 105830 ATGAGACGTTGTTGG---TCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACG 105774 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| |||| ||| | ||| ||||| | ||||| || || || || || || || Sbjct 105773 TTTTCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTC 105714 Query 288460 ACGAATATCTGCATT 288474 ||||| ||||||||| Sbjct 105713 ACGAAAATCTGCATT 105699 Score = 109 bits (120), Expect = 1e-18 Identities = 128/172 (74%), Gaps = 6/172 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || | ||| | ||| || |||||||| || ||||| | Sbjct 108815 TCCACCACGAAGACGGAGCACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGA 108756 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || ||||| ||||| | ||||||||| |||||||||| | ||| ||| ||||| Sbjct 108755 GAGAGTACGTCCATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTCTGCTGA---TCTGG 108699 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG 288414 ||||||||||| || || ||||| ||||| || ||||| |||| |||| Sbjct 108698 AGGAATTCCTTCTTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCG 108647 >seq4409 Length=33873 Score = 131 bits (144), Expect = 4e-25 Identities = 170/234 (73%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | |||| ||| || | ||| | || ||| ||||| |||||||| |||| Sbjct 17983 CCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGAC 17924 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 | || ||||||||||| | |||||| || |||||||||| | ||| || ||| Sbjct 17923 AAAGTCCGTCCGTCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTG---GTCTGGC 17867 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| || ||||| ||||| || || || ||||| |||| || || ||| Sbjct 17866 GGAATTCCTTCCTTGTCCTGAATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCG 17807 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || || ||||| ||||| || || | ||||| ||||| ||||||||| || Sbjct 17806 ACCTCAAGAGTGATGGTCTTGCCCGTTAAGGTCTTTACGAAAATCTGCATTGTG 17753 >seq4656 Length=6745 Score = 91.5 bits (100), Expect = 3e-13 Identities = 243/369 (66%), Gaps = 2/369 (1%) Strand=Plus/Plus Query 325127 TCTTTAGGGTTGTAACTGGGAATGTTCGTCGACCATCCGGTTCCGATACCACTCGATCCA 325186 ||| | || ||||| | || || || ||| ||| || ||||| |||||| | ||| Sbjct 5394 TCTCTGGGATTGTAGTTAGGTATTTTAGTCATCCACCCAGTTCCAATACCATCAGCACCA 5453 Query 325187 TTCACCAGGATACTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTATCGCCGTCG 325246 || ||||| | ||||||||| || | ||| | | ||||| || || | || Sbjct 5454 TTTACCAGAACCATCGGAATAATGGGTATATACCAAACGGGTTCAATTTTCTGATTATCA 5513 Query 325247 TCGTACATATATTTCAGAAGATTGTCGTCCGTATCGACGAAA-ACCTGTCGAGTCTGAGG 325305 || || || | | ||||| ||| || || | || |||| | | || ||| | || Sbjct 5514 TCATATTCATGTGTTAGAAGGGCGTCATC-GTTTGGATGAAATATCAAACGTGTCAGTGG 5572 Query 325306 GTTCAGTTTCatatatatatatCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGA 325365 || ||| || | ||||||| ||||| || ||||| || ||| || | | Sbjct 5573 AGACATTTTTGTAAAAATATATCTCGCACTTGCAGAGTCCTTTCCGCCCATTAAACGGGT 5632 Query 325366 ACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGC 325425 ||| || || || || ||| | || || ||||||||||||||| ||| || || Sbjct 5633 ACCAAATTGACCACGTGGTTCCAATAAATTAATATTATTGCTTCCGACAAAATTTTGAGC 5692 Query 325426 AAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGC 325485 ||| |||||||||||| | |||||| |||| || || |||||||| ||| || || Sbjct 5693 AAGATTCACGATGGTCGCACAGAGAGATACTTCACCGTGATGATAGGCCGAATGTTCAGC 5752 Query 325486 AACGTAACC 325494 || |||| Sbjct 5753 TACTGAACC 5761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179414142737488