Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq4656 127 5e-24 >seq4656 Length=6745 Score = 127 bits (140), Expect = 5e-24 Identities = 251/369 (68%), Gaps = 2/369 (1%) Strand=Plus/Plus Query 297248 TCTTTTGGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGATTCCACTCGAACCA 297307 ||| | |||||||| |||| || |||||| ||| || || || || ||| | |||| Sbjct 5394 TCTCTGGGATTGTAGTTAGGTATTTTAGTCATCCACCCAGTTCCAATACCATCAGCACCA 5453 Query 297308 TTCACCAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTGTCACCGTCA 297367 || ||||||| ||||||||| || | ||| | | ||||| || || | | ||| Sbjct 5454 TTTACCAGAACCATCGGAATAATGGGTATATACCAAACGGGTTCAATTTTCTGATTATCA 5513 Query 297368 TCATACAGATATTTCAGAAGATTATCGTCCGTATCGACGAAA-ACCTGTCGAGTCTGAGG 297426 ||||| || | | ||||| || || || | || |||| | | || ||| | || Sbjct 5514 TCATATTCATGTGTTAGAAGGGCGTCATC-GTTTGGATGAAATATCAAACGTGTCAGTGG 5572 Query 297427 GTTCAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGA 297486 || |||||| |||||||||| ||||| || ||||| || ||| || | | Sbjct 5573 AGACATTTTTGTAAAAATATATCTCGCACTTGCAGAGTCCTTTCCGCCCATTAAACGGGT 5632 Query 297487 ACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGC 297546 ||| || || || || ||| | || || ||||||||||||||| ||| || || Sbjct 5633 ACCAAATTGACCACGTGGTTCCAATAAATTAATATTATTGCTTCCGACAAAATTTTGAGC 5692 Query 297547 AAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGC 297606 ||| |||||||||||| | |||||| |||| || || |||||||| ||| || || Sbjct 5693 AAGATTCACGATGGTCGCACAGAGAGATACTTCACCGTGATGATAGGCCGAATGTTCAGC 5752 Query 297607 AACGTAACC 297615 || |||| Sbjct 5753 TACTGAACC 5761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102655379187600