Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2259 120 3e-22 seq4409 100 3e-16 seq1411 98.7 1e-15 seq820 89.7 5e-13 >seq2259 Length=79244 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | | || || || | | | ||||||||||| || || |||||| Sbjct 78062 CCACCTCTCAATCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCGGAG 78121 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| ||||||||||| | | |||| | ||| |||||||| || || Sbjct 78122 AGGGTGCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGG 78181 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||||||||| ||| |||| | |||| | ||| | |||||||| | || || Sbjct 78182 ATACCTTCTTTGTC-CTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCGAC 78240 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || |||||||| |||||||| || ||||| ||||| Sbjct 78241 CTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288 >seq4409 Length=33873 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| || || | || ||||||| | | || ||||||||||| || || ||| Sbjct 17984 GCCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGA 17925 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || ||| || |||||||| |||| |||| | | ||| ||||| || || Sbjct 17924 CAAAGTCCGTCCGTCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGG 17865 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| |||||| |||| | ||| | ||||| | || || | Sbjct 17864 AATTCCTTCCTTGTCC-TGAATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGA 17806 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || | || ||||| ||||||||||| Sbjct 17805 CCTCAAGAGTGATGGTCTTGCCCGTTAAGGTCTTTACGAAAATCTGCAT 17757 >seq1411 Length=135556 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA--GTCCTCGAGTTGTTTACCGGAAT 138481 || ||||| ||||||||||| | |||| ||| ||| || || |||||||| | Sbjct 105890 TCTTTTTGTATGTTGTAGTC--TGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGA 105833 Query 138482 AGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT- 138540 |||| ||||| |||||||| || || || ||||| ||||| ||| | |||| ||| | Sbjct 105832 AGATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCC-TGAATCTTTGCTTTCACG 105774 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||||||| | || || || | || | ||||||||||| || ||||| Sbjct 105773 TTTTCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTC 105714 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 105713 ACGAAAATCTGCAT 105700 >seq820 Length=22770 Score = 89.7 bits (98), Expect = 5e-13 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 153591 TTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCAC 153649 ||||| | || || |||||||||||||| || | || || |||| || |||| | || Sbjct 21386 TTCACAGGTATTGAAGCCAGATTACAGACAGCAATTTCGTCGGGCGACG-TGTATTCTAC 21328 Query 153650 GATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCG 153709 ||| || | || ||||| |||| |||||| || ||||| || | ||||| ||| | Sbjct 21327 GATTTCAGAACAAAGGTTACTGCCTTTTATCACTCCCAAGTTCTTTTGATTAGATTTTCT 21268 Query 153710 ATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTG 153757 |||||| ||||||||| | ||||| || || || || || ||||| Sbjct 21267 ATTGCAAGCGTCTTTGTAAAGCATATAAGGAGTACCAGTTTCTACTTG 21220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496163792661120