Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2259 131 2e-25 seq4409 113 4e-20 seq820 109 5e-19 >seq2259 Length=79244 Score = 131 bits (144), Expect = 2e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 ||||| || || ||||||||||||||||| ||| || ||| | ||| |||| |||| Sbjct 78086 TGCAGGGTGGACTCCTTTTGGATATTATAGTCGGAGAGGGTGCGACCATCCTCCAGTTGT 78145 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||| ||||| ||||| || || || |||||||| || |||||||| Sbjct 78146 TTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGGATACCTTCTTTGTCCTGAATTTTC 78205 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | ||| | ||||||||| | ||||| || || || | || || || || Sbjct 78206 GCCTTTACATTTTCAATGGTGTCGGATGGTTCGACCTCAAGGGTGATGGTCTTACCAGTG 78265 Query 45318 AGAGTTTTTACAAAAATTTGCATCG 45342 |||||||| || ||||||||||||| Sbjct 78266 AGAGTTTTCACGAAAATTTGCATCG 78290 >seq4409 Length=33873 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | ||| | || ||||||||||| |||||||||||| | || || || Sbjct 17966 CACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGACAAAGTCCGTCCGTCTTC 17907 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || |||||| || ||| | ||||||| |||||||| |||||||| ||||| || || || Sbjct 17906 CAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGGAATTCCTTCCTTGTCCTG 17847 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||||| || | ||| | ||||| || | ||||| || ||||| | || || Sbjct 17846 AATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTT 17787 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| |||| || ||||| ||||| ||||| Sbjct 17786 GCCCGTTAAGGTCTTTACGAAAATCTGCAT 17757 >seq820 Length=22770 Score = 109 bits (120), Expect = 5e-19 Identities = 121/159 (76%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659 ||||| ||||| || || || || ||||| ||||||||||| ||||| || ||| | ||| Sbjct 21220 CAAGTAGAAACTGGTACTCCTTATATGCTTTACAAAGACGCTTGCAATAGAAAATCTAAT 21279 Query 123660 CAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGC 123719 || | ||||||||| |||||| | ||||| ||||| || ||||| | ||||||| | Sbjct 21280 CAAAAGAACTTGGGAGTGATAAAAGGCAGTAACCTTTGTTCTGAAATCGTAGAATACA-C 21338 Query 123720 GATG-CCGATCAAGTGGCCGTGTGTAATTTGGCTTCGAT 123757 | | |||| || | || || |||||| ||||||| || Sbjct 21339 GTCGCCCGACGAAATTGCTGTCTGTAATCTGGCTTCAAT 21377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451913386964160