Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2028 113 7e-20 >seq2028 Length=154558 Score = 113 bits (124), Expect = 7e-20 Identities = 325/495 (66%), Gaps = 9/495 (2%) Strand=Plus/Plus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 || || | ||| ||||| || || || || || || || | || || || || || || Sbjct 60058 AATAGTAAGCATGCAAAATCACAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAA 60117 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | | | || ||||| | ||||| || | ||| ||||| || ||||| ||| Sbjct 60118 AATGTTAAACCGGGCATAAGACCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCA 60177 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 || ||||| || || || ||||| ||||| ||||| | || || || || |||| || Sbjct 60178 CTGAAAAAAATGCCTTCAACGGCAGCAAAAGCCACCAATCTTTCGCCGAACGAGGA--TG 60235 Query 160094 GTGTCATGGG--TCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCT 160151 | || | ||||| || |||||| ||||| ||||| | ||||||||| | Sbjct 60236 TTTTCGAGCTAATCCACTTTAGGGCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTT 60295 Query 160152 CGACGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCT 160211 | | ||||||||||| || | || || ||| |||| || |||| || | Sbjct 60296 CAATAGCGTTAAACAAGAACTCTTTTTCATTGGGATCGCTGATATACGTTTCAATAAGTT 60355 Query 160212 TCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCG 160271 | ||||||||| | || | |||||| || || ||||| || || ||| | | Sbjct 60356 TGCTGTACATTTCAGAATGGATATTTTCAATTGCAATCTGGAATCCATAAAAACAACGAG 60415 Query 160272 CCTCCAGATAC-TGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCG 160330 || ||| || || || || || |||| | || | ||||| |||| || | || Sbjct 60416 -CTTCAGTCACTTGAACTTCTTGACTGAAACGTTCCACAAGATTCTCATTTACAATACCA 60474 Query 160331 TCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGT 160390 || | ||| ||||| ||||| |||||||| || |||||||||| || || || ||| Sbjct 60475 TCTGAGGCAGCAAAAAAAGCTAACACGTGCGAAATGAAATGTCGTTCTTCAGATTTCAGT 60534 Query 160391 CTCTTTTCCCAGTGT 160405 || ||||||||| Sbjct 60535 ---TTCTCCCAGTGT 60546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794997202661760