Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq2028 113 7e-20
>seq2028
Length=154558
Score = 113 bits (124), Expect = 7e-20
Identities = 325/495 (66%), Gaps = 9/495 (2%)
Strand=Plus/Plus
Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973
|| || | ||| ||||| || || || || || || || | || || || || || ||
Sbjct 60058 AATAGTAAGCATGCAAAATCACAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAA 60117
Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033
| | | || ||||| | ||||| || | ||| ||||| || ||||| |||
Sbjct 60118 AATGTTAAACCGGGCATAAGACCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCA 60177
Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093
|| ||||| || || || ||||| ||||| ||||| | || || || || |||| ||
Sbjct 60178 CTGAAAAAAATGCCTTCAACGGCAGCAAAAGCCACCAATCTTTCGCCGAACGAGGA--TG 60235
Query 160094 GTGTCATGGG--TCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCT 160151
| || | ||||| || |||||| ||||| ||||| | ||||||||| |
Sbjct 60236 TTTTCGAGCTAATCCACTTTAGGGCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTT 60295
Query 160152 CGACGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCT 160211
| | ||||||||||| || | || || ||| |||| || |||| || |
Sbjct 60296 CAATAGCGTTAAACAAGAACTCTTTTTCATTGGGATCGCTGATATACGTTTCAATAAGTT 60355
Query 160212 TCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCG 160271
| ||||||||| | || | |||||| || || ||||| || || ||| | |
Sbjct 60356 TGCTGTACATTTCAGAATGGATATTTTCAATTGCAATCTGGAATCCATAAAAACAACGAG 60415
Query 160272 CCTCCAGATAC-TGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCG 160330
|| ||| || || || || || |||| | || | ||||| |||| || | ||
Sbjct 60416 -CTTCAGTCACTTGAACTTCTTGACTGAAACGTTCCACAAGATTCTCATTTACAATACCA 60474
Query 160331 TCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGT 160390
|| | ||| ||||| ||||| |||||||| || |||||||||| || || || |||
Sbjct 60475 TCTGAGGCAGCAAAAAAAGCTAACACGTGCGAAATGAAATGTCGTTCTTCAGATTTCAGT 60534
Query 160391 CTCTTTTCCCAGTGT 160405
|| |||||||||
Sbjct 60535 ---TTCTCCCAGTGT 60546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 794997202661760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |