Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2259 123 6e-23 seq1411 118 2e-21 seq4409 107 5e-18 >seq2259 Length=79244 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | ||| || || ||||||||||||| || ||||| | | || | || Sbjct 78073 TCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCGGAGAGGGTGCGACC 78132 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||| ||||| || || || || ||||| | ||| || ||||| || || |||||| Sbjct 78133 ATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGGATACCTTCTTT 78192 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 |||||||| || ||| || ||| | |||||| | || ||| || || | ||||| Sbjct 78193 GTCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCGACCTCAAGGGTGAT 78252 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| |||||||||||||| |||||||| Sbjct 78253 GGTCTTACCAGTGAGAGTTTTCACGAAAATTTG 78285 >seq1411 Length=135556 Score = 118 bits (130), Expect = 2e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 199439 TCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 || ||||| | ||||||||| | | || | || ||||| ||||| || || |||||| Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 |||||||| || ||||| || || ||||| |||||||||||| |||||| | Sbjct 105830 ATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACGTTT 105771 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 |||| ||||| | | ||| || ||||| ||||| || ||||| || || |||||||| Sbjct 105770 TCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCACG 105711 Query 199619 AAAATTTG 199626 ||||| || Sbjct 105710 AAAATCTG 105703 Score = 98.7 bits (108), Expect = 2e-15 Identities = 94/119 (79%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || ||||||||||||| ||||||||||| | ||| | ||||||||| || || ||||| Sbjct 108784 GTGGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGTCCATCTTCAAGTTGTTTTCCA 108725 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT 199551 |||||||| | | |||||| || ||| |||||||||| || ||||| ||| |||| Sbjct 108724 GCGAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAAT-TTTGGCTT 108667 >seq4409 Length=33873 Score = 107 bits (118), Expect = 5e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || |||||||| | || || || | |||||||| ||| |||||||| || || ||| Sbjct 17953 GTAGATTCCTTTTGAATATTATAATCGGACAAAGTCCGTCCGTCTTCCAGTTGTTTGCCG 17894 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 |||||||| | | ||||||||| || ||||||||| |||||||| ||| ||| Sbjct 17893 GCGAAGATCAATCTCTGCTGGTCTGGCGGAATTCCTTCCTTGTCCTGAATTTTTGCCTTT 17834 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || ||| | ||||| | | ||| || || | ||||| ||||| ||||| | || Sbjct 17833 ACATTTTCAATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTTAAGGTC 17774 Query 199613 TTCACAAAAATTTG 199626 || || ||||| || Sbjct 17773 TTTACGAAAATCTG 17760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178681491985032