Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq2259 123 6e-23
seq1411 118 2e-21
seq4409 107 5e-18
>seq2259
Length=79244
Score = 123 bits (136), Expect = 6e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473
||| || || | ||| || || ||||||||||||| || ||||| | | || | ||
Sbjct 78073 TCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCGGAGAGGGTGCGACC 78132
Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533
||| ||||| || || || || ||||| | ||| || ||||| || || ||||||
Sbjct 78133 ATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGGATACCTTCTTT 78192
Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593
|||||||| || ||| || ||| | |||||| | || ||| || || | |||||
Sbjct 78193 GTCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCGACCTCAAGGGTGAT 78252
Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||||||| |||||||||||||| ||||||||
Sbjct 78253 GGTCTTACCAGTGAGAGTTTTCACGAAAATTTG 78285
>seq1411
Length=135556
Score = 118 bits (130), Expect = 2e-21
Identities = 139/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 199439 TCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498
|| ||||| | ||||||||| | | || | || ||||| ||||| || || ||||||
Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831
Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558
|||||||| || ||||| || || ||||| |||||||||||| |||||| |
Sbjct 105830 ATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACGTTT 105771
Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618
|||| ||||| | | ||| || ||||| ||||| || ||||| || || ||||||||
Sbjct 105770 TCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCACG 105711
Query 199619 AAAATTTG 199626
||||| ||
Sbjct 105710 AAAATCTG 105703
Score = 98.7 bits (108), Expect = 2e-15
Identities = 94/119 (79%), Gaps = 1/119 (1%)
Strand=Plus/Minus
Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492
|| ||||||||||||| ||||||||||| | ||| | ||||||||| || || |||||
Sbjct 108784 GTGGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGTCCATCTTCAAGTTGTTTTCCA 108725
Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT 199551
|||||||| | | |||||| || ||| |||||||||| || ||||| ||| ||||
Sbjct 108724 GCGAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAAT-TTTGGCTT 108667
>seq4409
Length=33873
Score = 107 bits (118), Expect = 5e-18
Identities = 140/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492
|| || |||||||| | || || || | |||||||| ||| |||||||| || || |||
Sbjct 17953 GTAGATTCCTTTTGAATATTATAATCGGACAAAGTCCGTCCGTCTTCCAGTTGTTTGCCG 17894
Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552
|||||||| | | ||||||||| || ||||||||| |||||||| ||| |||
Sbjct 17893 GCGAAGATCAATCTCTGCTGGTCTGGCGGAATTCCTTCCTTGTCCTGAATTTTTGCCTTT 17834
Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612
|| ||| | ||||| | | ||| || || | ||||| ||||| ||||| | ||
Sbjct 17833 ACATTTTCAATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTTAAGGTC 17774
Query 199613 TTCACAAAAATTTG 199626
|| || ||||| ||
Sbjct 17773 TTTACGAAAATCTG 17760
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178681491985032
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |