Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2259 140 3e-28 seq4409 116 4e-21 seq1411 116 4e-21 >seq2259 Length=79244 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| ||||| || || ||||||||| | || ||||| | || Sbjct 78288 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAACCATCC 78229 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | ||||| | |||||||| || || ||| | |||||| Sbjct 78228 GACACCATTGAAAATGTAAAGGCGAAAATTCAGGACAAAGAAGGTATCCCCCCAGACCAA 78169 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || ||||| ||||| || | ||||||||| |||||| || Sbjct 78168 CAACGTTTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGCACCCTCTCCGACTATAAT 78109 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| | || ||||| ||||| || | |||||||| || Sbjct 78108 ATCCAAAAGGAGTCCACCCTGCACTTGGTACTCAGATTGAGAGGTGG 78062 >seq4409 Length=33873 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38243 aaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || |||||||| || | |||||||| |||||||| | || ||||| | | Sbjct 17756 AATGCAGATTTTCGTAAAGACCTTAACGGGCAAGACCATCACTCTTGAGGTCGAACCGTC 17815 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | ||| | || | |||||| | ||||| || |||||||| | ||||| Sbjct 17816 GGACACTATTGAAAATGTAAAGGCAAAAATTCAGGACAAGGAAGGAATTCCGCCAGACCA 17875 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | ||| |||||||| ||||| |||| || || | ||| || || Sbjct 17876 GCAGAGATTGATCTTCGCCGGCAAACAACTGGAAGACGGACGGACTTTGTCCGATTATAA 17935 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || ||||||||| | || | ||||||||||| || ||||||| ||| Sbjct 17936 TATTCAAAAGGAATCTACCTTACATTTGGTGCTTCGACTGAGAGGTGGC 17984 >seq1411 Length=135556 Score = 116 bits (128), Expect = 4e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 38235 TTTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 38294 ||| | | |||||| || ||||| ||||| || || || ||||||||||| | || || Sbjct 105691 TTTTATAGAATGCAGATTTTCGTGAAAACCCTTACTGGTAAAACCATCACATTGGAAGTT 105750 Query 38295 GAGGCCACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCC 38353 || | |||||| | | ||||| | |||| ||| || | ||||| || || || || Sbjct 105751 GAACCTTCCGACACTATCGAAAACG-TGAAAGCAAAGATTCAGGACAAGGAAGGGATCCC 105809 Query 38354 CGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA 38413 | | |||||||| || ||||| | ||| || |||||||| || |||| |||||||| Sbjct 105810 CCCAGACCAACAACGTCTCATCTTCGCTGGTAAACAGCTTGAAGACGGCCGCACCCTATC 105869 Query 38414 CGACTACAACATCCAAAAGGA 38434 ||||||||||| ||||| || Sbjct 105870 AGACTACAACATACAAAAAGA 105890 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 38322 AAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCG 38381 |||| ||||| | |||||||| |||||||| | || || ||| || | || | ||| Sbjct 108666 AAAGCCAAAATTCAAGACAAAGAAGGAATTCCTCCAGATCAGCAGAGGTTGATCTTCGCT 108725 Query 38382 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACG 38441 || ||||| || || || | || || ||| |||||||||||||||||||| | || Sbjct 108726 GGAAAACAACTTGAAGATGGACGTACTCTCTCTGACTACAACATCCAAAAGGAGTCCACC 108785 Query 38442 CTGCATTTGGTGCTGCGT 38459 | ||||||||||| ||| Sbjct 108786 TTACATTTGGTGCTCCGT 108803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500073415664640