Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq3936 127 2e-24 >seq3936 Length=42514 Score = 127 bits (140), Expect = 2e-24 Identities = 337/507 (66%), Gaps = 12/507 (2%) Strand=Plus/Plus Query 154626 TTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCATAC 154685 || ||||| ||| || | || ||||| |||||||| || ||| || || | | Sbjct 39208 TTTCAACCAAACAGCGGCGCCCAAGGTGAATATGCAGGGTTGCGAGCGATTCAG---TGC 39264 Query 154686 CATCAAGGATCAGGAGATGATAAA---AGAAATGTATGTTTGATACCAGAGTCAGCACAT 154742 |||| | | || || ||| ||| ||| | || |||||||| || | || ||| Sbjct 39265 TATCACGAAGCAAAAGGTGACAAACATAGAGACGTCTGTTTGATTCCTGTAAGCGCTCAT 39324 Query 154743 GGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGAT 154802 ||||||||||| ||||| || ||||| || |||| ||| | | ||||| |||| Sbjct 39325 GGAACTAATCCAGCTAGCGCCCAAATGGCTGGTATGAGAGTGGAACCGGTCAAA-GTGAA 39383 Query 154803 GA-TGATGGTAACATAGACATCAAAGATCTAGAGAAGAAAGCAATCATGAATACATTTGA 154861 | ||| || | ||| || | |||| || | || || | | || | | Sbjct 39384 AAATGACGGCACCATTGATGTATCAGATTTAAAATCTAAGGCCGAAAAGTTTAAAAATCG 39443 Query 154862 ACTGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAG 154921 ||| || ||| | ||||||||||| || || || | || |||||||| | || ||| Sbjct 39444 ACTATCGTGTCTCATGATTACATATCCTTCAACTAACGGAGTATTTGAGGAT-ACCGTAG 39502 Query 154922 ACAGA--TATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAAT 154979 |||| ||||| | || ||| | || || ||||| ||||| | || || || ||| Sbjct 39503 -CAGAAGTATGTGAAATAACCCATAAGAACGGAGGTCAAGTATACTTGGACGGTGCTAAT 39561 Query 154980 CTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTA 155039 | ||||| || || || || | ||| |||| || || || || | |||| || Sbjct 39562 ATGAATGCTCAAGTGGGTCTCTGCAGACCGGGTGATTACGGAAGCGACGTGTCTCATTTA 39621 Query 155040 AACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATA 155099 || ||||| |||||||| ||||| || ||||| |||||||| ||||| | |||||||| Sbjct 39622 AATTTACACAAAACATTTTGTATCCCGCATGGGGGTGGAGGACCTGGTATGGGTCCTATT 39681 Query 155100 GGTGTAGCAAAACATCTCACACCATTT 155126 || ||| | |||| | | |||||| Sbjct 39682 GGAGTAAAATCACATTTAGCTCCATTT 39708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579097710416640