Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq3936 132 6e-26 >seq3936 Length=42514 Score = 132 bits (146), Expect = 6e-26 Identities = 338/507 (67%), Gaps = 12/507 (2%) Strand=Plus/Plus Query 159301 TTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCATAC 159360 || ||||| ||| || | || ||||| |||||||| || ||| || || | | Sbjct 39208 TTTCAACCAAACAGCGGCGCCCAAGGTGAATATGCAGGGTTGCGAGCGATTCAG---TGC 39264 Query 159361 CATCAAGGATCAGGAGATGATAAA---AGAAATGTATGTTTGATACCAGAGTCAGCACAT 159417 |||| | | || || ||| ||| ||| | || |||||||| || | || ||| Sbjct 39265 TATCACGAAGCAAAAGGTGACAAACATAGAGACGTCTGTTTGATTCCTGTAAGCGCTCAT 39324 Query 159418 GGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGAT 159477 ||||||||||| || || ||||| || |||| ||| | | ||||| |||| Sbjct 39325 GGAACTAATCCAGCTAGCGCCCAAATGGCTGGTATGAGAGTGGAACCGGTCAAA-GTGAA 39383 Query 159478 GA-TGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAGCAATCATGAATACATTTGA 159536 | ||| |||| ||| || | |||| || | || || | | || | | Sbjct 39384 AAATGACGGCACCATTGATGTATCAGATTTAAAATCTAAGGCCGAAAAGTTTAAAAATCG 39443 Query 159537 ACTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAG 159596 ||| || ||| | |||||||||||||| || || | || |||||||| | | | || Sbjct 39444 ACTATCGTGTCTCATGATTACATATCCTTCAACTAACGGAGTATTTGAGGATACCGT-AG 39502 Query 159597 ACAGA--TATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAAT 159654 |||| ||||| | || ||| |||| || ||||| ||||| | || ||||| ||| Sbjct 39503 -CAGAAGTATGTGAAATAACCCATAAGAACGGAGGTCAAGTATACTTGGACGGTGCTAAT 39561 Query 159655 CTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTA 159714 | ||||| || || ||||| | ||| |||| || || || || | |||| || Sbjct 39562 ATGAATGCTCAAGTGGGTCTCTGCAGACCGGGTGATTACGGAAGCGACGTGTCTCATTTA 39621 Query 159715 AACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATT 159774 || ||||| || ||||| ||||| || ||||| |||||||| ||||| | ||||||||| Sbjct 39622 AATTTACACAAAACATTTTGTATCCCGCATGGGGGTGGAGGACCTGGTATGGGTCCTATT 39681 Query 159775 GGTGTAGCAAAACATCTCACACCATTT 159801 || ||| | |||| | | |||||| Sbjct 39682 GGAGTAAAATCACATTTAGCTCCATTT 39708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587934354226560