Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2259 158 3e-33 seq4409 141 2e-28 seq1411 125 2e-23 >seq2259 Length=79244 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| | || | ||| || |||||||| ||||| ||||| || |||| || || Sbjct 78067 TCTCAATCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCGGAGAGGGT 78126 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || || || ||||| || ||||| | |||||||||||||| || || || Sbjct 78127 GCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGGATACC 78186 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||| |||||||| ||| || || ||||||||||| || ||| || ||||| Sbjct 78187 TTCTTTGTCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCGACCTCAAG 78246 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| || || | |||||| ||||| | |||||| Sbjct 78247 GGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288 >seq4409 Length=33873 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || || ||||||||||| ||||||| | ||| | || ||||| || || || || Sbjct 17953 GTAGATTCCTTTTGAATATTATAATCGGACAAAGTCCGTCCGTCTTCCAGTTGTTTGCCG 17894 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| | || || |||||||| ||||| ||||| ||||| ||||||||| ||| Sbjct 17893 GCGAAGATCAATCTCTGCTGGTCTGGCGGAATTCCTTCCTTGTCCTGAATTTTTGCCTTT 17834 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || ||||| |||||||| ||| || ||||| || | ||||| || || || || Sbjct 17833 ACATTTTCAATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTTAAGGTC 17774 Query 195124 TTTACGAACACTTGCATT 195141 |||||||| | |||||| Sbjct 17773 TTTACGAAAATCTGCATT 17756 >seq1411 Length=135556 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 |||||||| || ||||| || | || || | || ||||| ||||| ||||| |||||| Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831 Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 || || |||||||||||||| || || ||||| ||||| ||||| ||| || ||||| Sbjct 105830 ATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACGTTT 105771 Query 195070 TCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACG 195129 || || ||||| ||| ||| ||||| | || | || || || || | ||||| ||| Sbjct 105770 TCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCACG 105711 Query 195130 AACACTTGCATT 195141 || | |||||| Sbjct 105710 AAAATCTGCATT 105699 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 |||||||| ||||| || ||||| || | ||||| | |||||||| || || || || Sbjct 108784 GTGGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGTCCATCTTCAAGTTGTTTTCCA 108725 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| | | || || ||||||||||| |||||||||||||||||||| || Sbjct 108724 GCGAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAATTTTGGCTTTT 108665 Query 195064 ACGTTCTCAATGGTGTCCGAA 195084 || || ||||| || || ||| Sbjct 108664 ACATTTTCAATAGTATCGGAA 108644 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 195028 GGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT 195087 || ||||| |||||||||||||||||||| || ||||| ||||||||||| || | Sbjct 108003 GGGGGAATTCCTTCTTTGTCTTGAATTTTAGCTTTTACGTTTTCAATGGTGTCTGAGGGT 107944 Query 195088 TCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || ||||| | |||| ||||| || |||| ||||||||||| Sbjct 107943 TCTACTTCTAATGTAATTGTCTTGCCAGTCAGGGTTTTTACGAA 107900 Score = 84.2 bits (92), Expect = 5e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || || || | || ||| |||||||||||||| ||||| || || ||||| || Sbjct 106472 TTTCCGGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTATCCTGAATCTTG 106413 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || || ||||| ||||| ||| ||||||||| || |||| ||||| || || Sbjct 106412 GCTTTTACATTTTCAATAGTGTCGGAAGGTTCCACTTCTAGAGTAATGGTCTTGCCAGTT 106353 Query 195118 AAAGTTTTTAC 195128 | ||||| || Sbjct 106352 AGGGTTTTCAC 106342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109255634656232