Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2028 331 1e-85 seq820 168 8e-37 >seq2028 Length=154558 Score = 331 bits (366), Expect = 1e-85 Identities = 628/921 (68%), Gaps = 10/921 (1%) Strand=Plus/Plus Query 18661 ACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAAT 18720 || || | ||| | ||||||| | ||| | |||||||| || || ||||| || ||| Sbjct 59767 ACACCAACTTTCTTATATTCGCCCACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTGTA 59826 Query 18721 GATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAAT 18780 || || |||||| ||||| ||||| || || ||| ||||| ||| | |||||| Sbjct 59827 GAAATGATCGTCATAAAGTCAAACGGATTCGTTGCACCATAGATTTTCTTGCAGCCTAAT 59886 Query 18781 TCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATT 18840 || || | | ||| |||||||||| ||||| ||||| | ||||||||| Sbjct 59887 TCACTTAACAAACGATCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCATT 59946 Query 18841 CCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCT 18900 || || | | || || | || || | | || ||||||||||| | ||||| ||| Sbjct 59947 CCAATCAGACTGACTGGCAAAGCCTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCT 60006 Query 18901 GATATAATAGATACAACTCTATCTTCATTAGGAGGGTATA----GAAGATGTTTAAACAT 18956 | |||||| ||||| |||| || ||| | | |||||| || | Sbjct 60007 GCAATAATACTGGTTACTCTTTCTTGT----GATGGTTTCTGATGCAGATGTGAGAATAG 60062 Query 18957 CAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 || |||||||||||||||||||| || || ||||| |||||||||||| |||||||| Sbjct 60063 TAAGCATGCAAAATCACAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGT 60122 Query 19017 TAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAA 19076 |||||| ||||| || || | ||| ||||||||||| || | ||||| ||| || Sbjct 60123 TAAACCGGGCATAAGACCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAA 60182 Query 19077 GAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATT 19136 || || ||||| || || |||||||| || | |||||| || ||| || || || Sbjct 60183 AAAAATGCCTTCAACGGCAGCAAAAGCCACCAATCTTTCGCC-GAACGAGGATGTTTTCG 60241 Query 19137 A-TGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAG 19195 | |||||| || || ||||||||||| ||||| || ||||| ||||| || || |||| Sbjct 60242 AGCTAATCCACTTTAGGGCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAG 60301 Query 19196 AATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGT 19255 ||||| | || |||| | ||| | | ||| | || || | | |||| Sbjct 60302 CGTTAAACAAGAACTCTTTTTCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGT 60361 Query 19256 ACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTG 19315 ||||||| ||||| |||||||| || || ||||| ||||| |||||||| | ||||| | Sbjct 60362 ACATTTCAGAATGGATATTTTCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAG 60421 Query 19316 TTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAG 19375 | | || ||||| || || | ||| || | ||| ||||| || || ||||| | Sbjct 60422 TCACTTGAACTTCTTGACTGAAACGTTCCACAAGATTCTCATTTACAATACCATCTGAGG 60481 Query 19376 CTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCC 19435 | |||||||| ||||| || || ||| |||||| ||| || || | | | | | || Sbjct 60482 CAGCAAAAAAAGCTAACACGTGCGAAATGAAATGTCGTTCTTCAGATTTCAGTTTCTCCC 60541 Query 19436 AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTT 19495 | | | ||| | | | || ||||| || |||||||| ||||| || |||| Sbjct 60542 AGTGTCGTAGATCATGGGTGAGGTCCACTTCCTCGGTAGTCCAAAAGGAAGCTTCAGCTT 60601 Query 19496 TTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTAT 19555 || || | | ||| ||||| | ||| || || |||| ||||||||| | Sbjct 60602 CCTTGTATTTCTGCCAAATATCTGGGAATTCAATTGGGAATAAAACAAATCTTCGAGGGT 60661 Query 19556 TTTCTTTAAGAATAGGTTCCA 19576 ||||||| || | |||||||| Sbjct 60662 TTTCTTTCAGTAAAGGTTCCA 60682 >seq820 Length=22770 Score = 168 bits (186), Expect = 8e-37 Identities = 407/624 (65%), Gaps = 58/624 (9%) Strand=Plus/Minus Query 48283 TTTTAAG-TTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATT 48341 |||| || ||||| |||||| | | ||| |||||||||||||| ||||| || || | Sbjct 19998 TTTTGAGATTCAA-AAAGTCAAAAACATCCGCATGCCATGGTTCCAAATAAATAGCGAAA 19940 Query 48342 ACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTT 48401 | || |||| ||||||||| || ||||| | |||| |||||||||| ||| | ||| | Sbjct 19939 GCTCCAGGTCTTTTATTACCACCCTGATCCACATATTTGGCAGTATTATTAAACACTTTA 19880 Query 48402 AACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCT 48461 | ||| || || | |||||| || | ||||| || || | ||||||| | || ||| Sbjct 19879 AGCATAGGAACGAGACCATTGGAAGTGCCATTTGTGCCAGCAATATAAGTGCCTTGTGCT 19820 Query 48462 CTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGT 48521 || |||||| || | ||| || || ||||| |||| || || | |||||| | Sbjct 19819 CTAATATTATGAACATTTACACCAATTCCTCCTGCATTTTTTGAAATGATAGCACATTGA 19760 Query 48522 TTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 | || | |||||||| || | |||||| || ||| ||| | |||||| | Sbjct 19759 GTGAGACACTTGTAAATTCCCTCAAGACTATCCTCAGGCATCATTAGCAAGAAACAAGAA 19700 Query 48582 GACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCAT 48641 |||| ||| || || ||| ||||||||| || ||| ||||| | || || Sbjct 19699 GACAATTGTGGTCTTGGTGTAGCTGCATTAAATAACGTAGGACTGGCATGCGTGAAATAT 19640 Query 48642 TTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATC----CCATTGATG--- 48694 || | ||||| | || || ||||||||| | | || || || |||| ||| Sbjct 19639 TTTTGTGATAGATAATTGTAAGTTTCAATAGCGGCCTCAATGTCCTCTCCATGAATGCCT 19580 Query 48695 TA------TACCT-----------------------------ATAGAT------------ 48707 || ||||| || ||| Sbjct 19579 TAAAAAATTACCTCGTGGATTATAAGGTTTATAAAAAAAAACATGGATACTTACCTATTG 19520 Query 48708 --ACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGAT 48765 || | ||| | ||||| |||||||||||| ||||||||| ||| ||||| || | || Sbjct 19519 CTACTCTCATAAGCATATGTTGAGGTCTTTCGACAATTTTGCCATTAATTTTTAATAAAT 19460 Query 48766 ATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAA 48825 | || |||||| ||||||||||||||||||||||| ||||| || | |||| |||| Sbjct 19459 AAGACCTTTCCAGAGTTTTAAAACCAAAATAGTTGTAAGAAAAATCTCTGTCATAGATAA 19400 Query 48826 TTGATGAATTTATTCTTTCCTTAT 48849 | ||||||| || ||||||| Sbjct 19399 TATTGGAATTTAGTCGGTCCTTAT 19376 Score = 107 bits (118), Expect = 2e-18 Identities = 402/640 (63%), Gaps = 62/640 (10%) Strand=Plus/Minus Query 46965 AATTTGTCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAA 47024 ||||| ||| || || || |||| || ||||| || | |||||||| |||||| Sbjct 22469 AATTTTGATTTATCAACGGTGAACTGTATGGGATTGGCTGCGGGTTTTGTTCTTAAATAG 22410 Query 47025 TACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAA 47084 ||||| ||||| || | ||| |||| || || || ||||| |||| | Sbjct 22409 TACATTCCAGTTTTAAGACCCTTTTTCCAACCGTAAAAGTGCATTGAGCATAATACCCCA 22350 Query 47085 TAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTA 47144 || |||||| | || ||||| || | | |||| | ||||| ||||| || |||||| Sbjct 22349 TAGGTAGGTTTCGCGATGTGAATGTTTAAACTTTGAGTTTGATCGATAAAAGCGCCTCTA 22290 Query 47145 TCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGT 47204 || || ||||| |||| || ||| |||| || || ||||| || ||||| || ||| | Sbjct 22289 TCCGCCGCCATGTCTATGATTACCTTTTGAGGAATTTCCCAAACAGTTTTGTAGATTGTT 22230 Query 47205 TTAATGTCTTCTGGGAGATTA---GTAT--TTTGAATAGATCCTCCgttttctataattt 47259 || | || || ||| ||| |||| |||| || || |||| || ||| ||||| Sbjct 22229 TTTAAATCA-CTAGGA-ATTCCAGGTATGTTTTGGATTGACCCTCGATTGGCTAGAATTT 22172 Query 47260 tgttttttaattcatttgaccaaagttttcgttcagttaa-tgtttt--taaAAGATGAG 47316 ||||| | ||| ||| | | || ||||||||| | |||| ||| ||||| Sbjct 22171 GATTTTTCATCACATCATCCCACAATCCTCTTTCAGTTAAGTCTTTTAGTAAGTGATGAT 22112 Query 47317 G---------------------ATT-AACAATT--------------------------- 47327 ||| ||| ||| Sbjct 22111 TGACGATCTGAAAAATATTTTAATTGAACTATTCGCTATTTTGAAGGTACTATTATTTTA 22052 Query 47328 ---TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATA 47384 || ||||| || || || |||||||| | || || ||||| || || ||||| ||| Sbjct 22051 ACCTGGAATTCGCCTGAAAGCACTCTACGAGTGTAAATGTTACTAGTGTAGGGTTCAATA 21992 Query 47385 GATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAG 47444 ||||| || || ||||||||||||||||| ||||||||||| | || | || ||| Sbjct 21991 CTCTCATTGTTGCCTAAAATTTGAGCAGTTGAAGCTGTAGGCATAGGAGCCAATAGCAAG 21932 Query 47445 CTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCT 47504 ||||||| ||||| ||| || | | ||||||||| | |||| Sbjct 21931 GAGTTTCTTAATCCATGTTTGGCAATTTTTACTTTCAATGCATCCCAATCCCATAAATCT 21872 Query 47505 GATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTT 47544 || || || | ||| | ||| ||||| |||||||||| Sbjct 21871 GACGGTTTCACGTCCCACATATCGTATTGTAGAATTCCTT 21832 Score = 104 bits (114), Expect = 3e-17 Identities = 222/338 (66%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 47712 CCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAAT 47771 ||||||| || ||||| || |||||||| | ||||| ||| || |||||||||| Sbjct 21554 CCTTGAATTCCTATACCGATAGGTCTATGTCTCTTATTGGAATTTTCTGCTTCTGGTAGA 21495 Query 47772 GGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCT 47831 || || | ||||||||| ||||| ||||| | || | | Sbjct 21494 GGGTAATAGTTTATATCGATAATCTTATTCAAGTTTCTAGTCACTATTTTAGTGATATTT 21435 Query 47832 CTTAATTTATTAAAATCAAA---CTTGTTATTTA---TAACAAACCTATTAAGTGCTATA 47885 | | ||| | ||||||||| ||| ||| | |||||||| | || | | ||| Sbjct 21434 TTGAGTTTTTCAAAATCAAAACTCTTTCTATCTGCATTAACAAACATGTTCACAGGTATT 21375 Query 47886 GATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACAT 47945 || || |||||||| ||||| | || | || || |||| || ||||||| ||| Sbjct 21374 GAAGCCAGATTACAGACAGCAATTTCGTCGGGCGACGTGTATTCTACGATTTCAGAACAA 21315 Query 47946 AGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCC 48005 || |||| | ||| || ||||| || | |||||| | || || ||||| Sbjct 21314 AGGTTACTGCCTTTTATCACTCCCAAGTTCTTTTGATTAGATTTTCTATTGCAAGCGTCT 21255 Query 48006 TTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGA 48043 |||||||||||| |||| || |||||||||| ||||| Sbjct 21254 TTGTAAAGCATATAAGGAGTACCAGTTTCTACTTGAGA 21217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561997108981440