Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2028 242 4e-59 seq2179 102 1e-16 >seq2028 Length=154558 Score = 242 bits (268), Expect = 4e-59 Identities = 517/763 (68%), Gaps = 8/763 (1%) Strand=Plus/Plus Query 36876 ACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGT 36935 || || | ||| | |||||| || ||| |||| ||||| ||||| || |||||| Sbjct 59767 ACACCAACTTTCTTATATTCGCCCACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTGTA 59826 Query 36936 GATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGATAAT 36995 || || | |||||| ||||| ||||| | || | ||| || | | || |||| Sbjct 59827 GAAATGATCGTCATAAAGTCAAACGGATTCGTTGCACCATAGATTTTCTTGCAGCCTAAT 59886 Query 36996 TC-CTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTAT 37054 || ||| | || | ||| || ||||||||||| || | |||||| | || | || || Sbjct 59887 TCACTTAACAAACG-ATCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCAT 59945 Query 37055 ACCAATTAGTTTTACTGGAATTGCATCTTG-AAGAAATAGTTTTTCTATTATTACAGCAT 37113 ||||| || | ||||| | || || ||||| | || ||||||| | || |||| Sbjct 59946 TCCAATCAGACTGACTGGCAAAGCCTCAGACAAGAACTC-TTGTTCTATTGTAACTGCAT 60004 Query 37114 CTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATA 37173 || || ||| | | ||||| | ||| | | | || | || | || Sbjct 60005 CTGCAATAATACTGGTTACTCTTTCTTGTGATGGTTTCTGATGCAGATGTGAGAATAGTA 60064 Query 37174 AACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTA 37233 | ||||||||||||||||||| |||||||||||| |||||||||||| ||||| |||| Sbjct 60065 AGCATGCAAAATCACAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTA 60124 Query 37234 ATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGA 37293 | || ||||| | ||| | ||| || | ||| || || |||||||| ||| || | Sbjct 60125 AACCGGGCATAAGACCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAAAA 60184 Query 37294 AAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATC-A 37352 |||| |||||||| || ||||| || || | | | ||||| | || | | || | Sbjct 60185 AAATGCCTTCAACGGCAGCAAAAGCCACCAATCTTTCGCCGAACGAGGA--TGTTTTCGA 60242 Query 37353 G-AAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGC 37411 | |||||| ||| | |||||| || || |||||||| || |||||||| || Sbjct 60243 GCTAATCCACTTTAGGGCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGC 60302 Query 37412 TTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATA 37471 || || | || | |||||| | ||| | ||||| || ||||| ||| || || Sbjct 60303 GTTAAACAAGAACTCTTTTTCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGTA 60362 Query 37472 CATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGA 37531 ||||||||| || ||||||||||| || ||||| || ||||||||||| | |||||||| Sbjct 60363 CATTTCAGAATGGATATTTTCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAGT 60422 Query 37532 TAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGC 37591 | |||||| || | | || | | | | || ||||| || || ||||| || Sbjct 60423 CACTTGAACTTCTTGACTGAAACGTTCCACAAGATTCTCATTTACAATACCATCTGAGGC 60482 Query 37592 TGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 37634 ||||| ||||| | || | || ||||||| ||| ||| Sbjct 60483 AGCAAAAAAAGCTAACACGTGCGAAATGAAATGTCGTTCTTCA 60525 >seq2179 Length=94981 Score = 102 bits (112), Expect = 1e-16 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 153288 GGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCT 153347 |||||||| || || ||||| ||||| |||||| |||||| | ||||| ||||||||| Sbjct 60211 GGTGTTTTGCACACCAAATTGTGGATTATTGATAGAAAACATCTTTATATTGGAAGTGCT 60270 Query 153348 AATATGGATTGGAGATCACTAACTCAAGTAA 153378 || ||||||||||| ||||| |||||||||| Sbjct 60271 AACATGGATTGGAGGTCACTGACTCAAGTAA 60301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592199106651840