Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4409 109 4e-19 seq1411 84.2 2e-11 >seq4409 Length=33873 Score = 109 bits (120), Expect = 4e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || || || || | ||||||||||| || || ||||||||||| ||||| | Sbjct 17985 CGCCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGG 17926 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | | | | || |||| |||| || || ||||| || |||| || ||| || || | | Sbjct 17925 ACAAAGTCCGTCCGTCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCG 17866 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| || |||||||| ||| ||| |||||| | | || || |||| || | Sbjct 17865 GAATTCCTTCCTTGTCCTGAATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGA 17806 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||| | || || || || ||||| || || ||||| ||||||||||| ||| Sbjct 17805 CCTCAAGAGTGATGGTCTTGCCCGTTAAGGTCTTTACGAAAATCTGCATTGTG 17753 >seq1411 Length=135556 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||| || ||||| || ||||| | || |||| || | ||| ||||| || || Sbjct 105890 TCTTTTTGTATGTTGTAGTCTGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGAAG 105831 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || || ||||| || | ||| | || |||||||| ||||||| ||| || Sbjct 105830 ATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACGTTT 105771 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || | || || |||| || || ||||| || || | ||||| || Sbjct 105770 TCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCACG 105711 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 105710 AAAATCTGCAT 105700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380863800006408