Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq820 120 2e-22 >seq820 Length=22770 Score = 120 bits (132), Expect = 2e-22 Identities = 245/362 (68%), Gaps = 4/362 (1%) Strand=Plus/Minus Query 26003 TTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAA 26062 ||||| |||| || || ||||||| ||| | ||||||||||| ||||| ||||| ||| Sbjct 19999 TTTTTGAGATTCAAAAAGTCAAAAACATCCGCATGCCATGGTTCCAAATAAATAGCGAAA 19940 Query 26063 CTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTC 26122 || |||||| ||||| ||||| || ||| | ||||| | ||| || ||||| Sbjct 19939 GCTCCAGGTCTTTTATTACCACCCTGATCCACATATTTGGCAGTATTATTAAACACTTTA 19880 Query 26123 AACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGAT 26182 | ||| ||||| | ||| | ||| || ||||||| | ||| | | ||| | | Sbjct 19879 AGCATAGGAACGAGACCATTGGAAGTGCCATTTGTGCCAGCAATATAAGTGCCTTGTGCT 19820 Query 26183 CTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAAT-- 26240 ||||||| ||| ||| | ||| ||||| || || ||||||||| ||||| | Sbjct 19819 CTAATATTATGAACATTTACACCAATTCCTCCTGCATTTTTTGAAATGATAGCACATTGA 19760 Query 26241 CTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAG 26300 ||| || | | ||||||| | | ||||| | ||| || || ||||||| Sbjct 19759 GTGAGAC--ACTTGTAAATTCCCTCAAGACTATCCTCAGGCATCATTAGCAAGAAACAAG 19702 Query 26301 AAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAAT 26360 |||| ||||| | | ||| ||| ||||||||| || || | ||||| || ||| Sbjct 19701 AAGACAATTGTGGTCTTGGTGTAGCTGCATTAAATAACGTAGGACTGGCATGCGTGAAAT 19642 Query 26361 AT 26362 || Sbjct 19641 AT 19640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252990977928200