Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq3936 149 7e-31 >seq3936 Length=42514 Score = 149 bits (164), Expect = 7e-31 Identities = 339/504 (67%), Gaps = 6/504 (1%) Strand=Plus/Minus Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 |||||| | | |||| | ||| ||||||||||| | ||||| |||||||| ||||| Sbjct 39708 AAATGGAGCTAAATGTGATTTTACTCCAATAGGACCCATACCAGGTCCTCCACCCCCATG 39649 Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGG 138280 || ||||| ||||| || |||||||||| |||| | || || || || |||| || Sbjct 39648 CGGGATACAAAATGTTTTGTGTAAATTTAAATGAGACACGTCGCTTCCGTAATCACCCGG 39589 Query 138281 TTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATT 138340 | | ||||| || || ||||| | ||| ||||| || | ||||| ||||| || || Sbjct 39588 TCTGCAGAGACCCACTTGAGCATTCATATTAGCACCGTCCAAGTATACTTGACCTCCGTT 39529 Query 138341 GTCATGAACGATCTTACATA--TCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGAT 138398 | ||| || | ||||| |||| || | | | |||||||| || | ||| || Sbjct 39528 CTTATGGGTTATTTCACATACTTCTG-CT-ACGGTATCCTCAAATACTCCGTTAGTTGAA 39471 Query 138399 GGATATGTAATCATAATACATGAGAGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGA 138458 |||||||||||||| | ||| || ||| | | || | | || || | || | Sbjct 39470 GGATATGTAATCATGAGACACGATAGTCGATTTTTAAACTTTTCGGCCTTAGATTTTAAA 39411 Query 138459 TCTTTGATGTCTATGTTGCCATCA-TCATCACACTTGACACCTACAACTTTCATTCCTGC 138517 ||| | || ||| |||| ||| | |||| ||||| | | ||| |||| || || Sbjct 39410 TCTGATACATCAATGGTGCCGTCATTTTTCAC-TTTGACCGGTTCCACTCTCATACCAGC 39352 Query 138518 CATGACTGCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCT 138577 ||| || ||||| |||||||||||||| || | || |||| ||| || | ||| Sbjct 39351 CATTTGGGCGCTAGCTGGATTAGTTCCATGAGCGCTTACAGGAATCAAACAGACGTCTCT 39292 Query 138578 TTTATCATCTCCTGATCCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACC 138637 | | || ||| | ||| ||||| || || ||| || |||||||| ||||| Sbjct 39291 ATGTTTGTCACCTTTTGCTTCGTGATAGCACTGAATCGCTCGCAACCCTGCATATTCACC 39232 Query 138638 CTGTGATCCTGCGTTAGGTTGTAA 138661 || | || ||| ||||| || Sbjct 39231 TTGGGCGCCGCTGTTTGGTTGAAA 39208 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 139271 ACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGAT 139330 ||| |||||| | ||| | | | | ||||||||||| |||| |||||| || || || || Sbjct 38571 ACCGTGATATACAGCAAACATTGCGGACATATTTGCAAGCAATGCTTGAGCCGTACATAT 38512 Query 139331 GTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTA 139390 ||||| || ||||| ||||||||||| || || ||||| ||||||| || || | ||| Sbjct 38511 ATTACTTGTCGCTTTATCTCTTCTAATGTGTTGTTCTCTTGTTTGTAACGCCAAACGGTA 38452 Query 139391 TGCA 139394 | || Sbjct 38451 TCCA 38448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578883353017920