Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_020845.1
Length=180977
Score E
Sequences producing significant alignments: (Bits) Value
seq3936 149 7e-31
>seq3936
Length=42514
Score = 149 bits (164), Expect = 7e-31
Identities = 339/504 (67%), Gaps = 6/504 (1%)
Strand=Plus/Minus
Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220
|||||| | | |||| | ||| ||||||||||| | ||||| |||||||| |||||
Sbjct 39708 AAATGGAGCTAAATGTGATTTTACTCCAATAGGACCCATACCAGGTCCTCCACCCCCATG 39649
Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGG 138280
|| ||||| ||||| || |||||||||| |||| | || || || || |||| ||
Sbjct 39648 CGGGATACAAAATGTTTTGTGTAAATTTAAATGAGACACGTCGCTTCCGTAATCACCCGG 39589
Query 138281 TTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATT 138340
| | ||||| || || ||||| | ||| ||||| || | ||||| ||||| || ||
Sbjct 39588 TCTGCAGAGACCCACTTGAGCATTCATATTAGCACCGTCCAAGTATACTTGACCTCCGTT 39529
Query 138341 GTCATGAACGATCTTACATA--TCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGAT 138398
| ||| || | ||||| |||| || | | | |||||||| || | ||| ||
Sbjct 39528 CTTATGGGTTATTTCACATACTTCTG-CT-ACGGTATCCTCAAATACTCCGTTAGTTGAA 39471
Query 138399 GGATATGTAATCATAATACATGAGAGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGA 138458
|||||||||||||| | ||| || ||| | | || | | || || | || |
Sbjct 39470 GGATATGTAATCATGAGACACGATAGTCGATTTTTAAACTTTTCGGCCTTAGATTTTAAA 39411
Query 138459 TCTTTGATGTCTATGTTGCCATCA-TCATCACACTTGACACCTACAACTTTCATTCCTGC 138517
||| | || ||| |||| ||| | |||| ||||| | | ||| |||| || ||
Sbjct 39410 TCTGATACATCAATGGTGCCGTCATTTTTCAC-TTTGACCGGTTCCACTCTCATACCAGC 39352
Query 138518 CATGACTGCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCT 138577
||| || ||||| |||||||||||||| || | || |||| ||| || | |||
Sbjct 39351 CATTTGGGCGCTAGCTGGATTAGTTCCATGAGCGCTTACAGGAATCAAACAGACGTCTCT 39292
Query 138578 TTTATCATCTCCTGATCCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACC 138637
| | || ||| | ||| ||||| || || ||| || |||||||| |||||
Sbjct 39291 ATGTTTGTCACCTTTTGCTTCGTGATAGCACTGAATCGCTCGCAACCCTGCATATTCACC 39232
Query 138638 CTGTGATCCTGCGTTAGGTTGTAA 138661
|| | || ||| ||||| ||
Sbjct 39231 TTGGGCGCCGCTGTTTGGTTGAAA 39208
Score = 98.7 bits (108), Expect = 1e-15
Identities = 96/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 139271 ACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGAT 139330
||| |||||| | ||| | | | | ||||||||||| |||| |||||| || || || ||
Sbjct 38571 ACCGTGATATACAGCAAACATTGCGGACATATTTGCAAGCAATGCTTGAGCCGTACATAT 38512
Query 139331 GTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTA 139390
||||| || ||||| ||||||||||| || || ||||| ||||||| || || | |||
Sbjct 38511 ATTACTTGTCGCTTTATCTCTTCTAATGTGTTGTTCTCTTGTTTGTAACGCCAAACGGTA 38452
Query 139391 TGCA 139394
| ||
Sbjct 38451 TCCA 38448
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578883353017920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |