Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq2259 136 7e-27
seq1411 122 2e-22
>seq2259
Length=79244
Score = 136 bits (150), Expect = 7e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||||||||||| ||||||| |||| || | ||| || ||||||||||||
Sbjct 78059 ATACCACCTCTCAATCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCG 78118
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| | || | | ||| || | |||||| || ||||| || || | ||||| || ||
Sbjct 78119 GAGAGGGTGCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGG 78178
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || |||||||| || || ||||| | |||| |||| ||| || ||||| | ||
Sbjct 78179 GGGATACCTTCTTTGTCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCG 78238
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || || || ||||| || || ||||| || || ||||||||
Sbjct 78239 ACCTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288
>seq1411
Length=135556
Score = 122 bits (134), Expect = 2e-22
Identities = 106/132 (80%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277
|||||||||||||| ||||| || || || ||||| || ||||| ||||| || || |||
Sbjct 106472 TTTCCGGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTATCCTGAATCTTG 106413
Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337
| ||||| |||| |||||| ||||||| || ||||||||||| || || || || |||
Sbjct 106412 GCTTTTACATTTTCAATAGTGTCGGAAGGTTCCACTTCTAGAGTAATGGTCTTGCCAGTT 106353
Query 193338 AGCGTTTTTACA 193349
|| ||||| |||
Sbjct 106352 AGGGTTTTCACA 106341
Score = 109 bits (120), Expect = 1e-18
Identities = 120/160 (75%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
|| || |||| ||| || || | ||| || || || ||||| || | || | |
Sbjct 108802 CGGAGCACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGTCCA 108743
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | ||||||||| || || || || ||||| ||||| ||||| |||||||||||
Sbjct 108742 TCTTCAAGTTGTTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTTG 108683
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAG 193305
||||| ||||||| ||||| |||| ||||||||||||||
Sbjct 108682 TCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAG 108643
Score = 98.7 bits (108), Expect = 2e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| || ||||| |||| || |||| |||||||| | ||| || ||| || |||||
Sbjct 108591 ATTCCGCCTCTTAATCTCAGAACCAAGTGCAATGTTGACTCCTTCTGAATGTTGTAGTCA 108532
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| | || | ||| ||||||||||||||||||||||| ||||||||||| || |||
Sbjct 108531 GAAAGGGTACGTCCATCTTCTAATTGTTTTCCGGCAAAAATCAATCTCTGTTGGTCTGGA 108472
Query 193251 GGTATTCCTTCTTT 193264
|| || ||||| ||
Sbjct 108471 GGAATACCTTCCTT 108458
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899475638670720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |