Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq2259 136 7e-27 seq1411 122 2e-22 >seq2259 Length=79244 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||||||||| ||||||| |||| || | ||| || |||||||||||| Sbjct 78059 ATACCACCTCTCAATCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCG 78118 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | | ||| || | |||||| || ||||| || || | ||||| || || Sbjct 78119 GAGAGGGTGCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGG 78178 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| || || ||||| | |||| |||| ||| || ||||| | || Sbjct 78179 GGGATACCTTCTTTGTCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCG 78238 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || ||||| || || ||||| || || |||||||| Sbjct 78239 ACCTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288 >seq1411 Length=135556 Score = 122 bits (134), Expect = 2e-22 Identities = 106/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 |||||||||||||| ||||| || || || ||||| || ||||| ||||| || || ||| Sbjct 106472 TTTCCGGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTATCCTGAATCTTG 106413 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 | ||||| |||| |||||| ||||||| || ||||||||||| || || || || ||| Sbjct 106412 GCTTTTACATTTTCAATAGTGTCGGAAGGTTCCACTTCTAGAGTAATGGTCTTGCCAGTT 106353 Query 193338 AGCGTTTTTACA 193349 || ||||| ||| Sbjct 106352 AGGGTTTTCACA 106341 Score = 109 bits (120), Expect = 1e-18 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||| ||| || || | ||| || || || ||||| || | || | | Sbjct 108802 CGGAGCACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGTCCA 108743 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||||||| || || || || ||||| ||||| ||||| ||||||||||| Sbjct 108742 TCTTCAAGTTGTTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTTG 108683 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAG 193305 ||||| ||||||| ||||| |||| |||||||||||||| Sbjct 108682 TCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAG 108643 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||| |||| || |||| |||||||| | ||| || ||| || ||||| Sbjct 108591 ATTCCGCCTCTTAATCTCAGAACCAAGTGCAATGTTGACTCCTTCTGAATGTTGTAGTCA 108532 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| ||||||||||||||||||||||| ||||||||||| || ||| Sbjct 108531 GAAAGGGTACGTCCATCTTCTAATTGTTTTCCGGCAAAAATCAATCTCTGTTGGTCTGGA 108472 Query 193251 GGTATTCCTTCTTT 193264 || || ||||| || Sbjct 108471 GGAATACCTTCCTT 108458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899475638670720